miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14326 5' -55.5 NC_003521.1 + 236458 0.68 0.91067
Target:  5'- --aGCGG-GACGCGGGCCGCGaUGa- -3'
miRNA:   3'- cugUGCCuCUGCGCUUGGUGCgACac -5'
14326 5' -55.5 NC_003521.1 + 227862 0.67 0.936547
Target:  5'- aGACugGGAuucaugaggucccGACGCGGGauGCGCUGUu -3'
miRNA:   3'- -CUGugCCU-------------CUGCGCUUggUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 222644 0.66 0.96459
Target:  5'- gGGC-CGGcAGGCGCGcagcgccuCCACGCUGc- -3'
miRNA:   3'- -CUGuGCC-UCUGCGCuu------GGUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 217303 0.69 0.892181
Target:  5'- cGACA-GG-GugGUG-ACCACGCUGUa -3'
miRNA:   3'- -CUGUgCCuCugCGCuUGGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 216920 0.66 0.967687
Target:  5'- uGGCAgCGGAGGCGguCGAcCCcauACGCUGUu -3'
miRNA:   3'- -CUGU-GCCUCUGC--GCUuGG---UGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 216126 0.7 0.849514
Target:  5'- cGGCGCGGAGGcCGCGGcagaggaagGCCAC-CUGg- -3'
miRNA:   3'- -CUGUGCCUCU-GCGCU---------UGGUGcGACac -5'
14326 5' -55.5 NC_003521.1 + 214822 0.72 0.764338
Target:  5'- gGGCGCGGcGACgGCGGuuCCAUGCUGUu -3'
miRNA:   3'- -CUGUGCCuCUG-CGCUu-GGUGCGACAc -5'
14326 5' -55.5 NC_003521.1 + 213610 0.67 0.937019
Target:  5'- aGGCuguUGGGGugGCGGucGCCGCGCa--- -3'
miRNA:   3'- -CUGu--GCCUCugCGCU--UGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 213102 0.66 0.96459
Target:  5'- ----aGGAGACGCGGcucgaCGCGCUGg- -3'
miRNA:   3'- cugugCCUCUGCGCUug---GUGCGACac -5'
14326 5' -55.5 NC_003521.1 + 212073 0.67 0.945985
Target:  5'- --gGCGGuGGCGCGGcCCGCGCg--- -3'
miRNA:   3'- cugUGCCuCUGCGCUuGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 209352 0.68 0.91067
Target:  5'- cGACGCGGuuACGUGAuguACCugGCUu-- -3'
miRNA:   3'- -CUGUGCCucUGCGCU---UGGugCGAcac -5'
14326 5' -55.5 NC_003521.1 + 204745 0.67 0.957785
Target:  5'- gGugAUGGAGGCGCcgccGCCGCccuGUUGUGu -3'
miRNA:   3'- -CugUGCCUCUGCGcu--UGGUG---CGACAC- -5'
14326 5' -55.5 NC_003521.1 + 202734 0.67 0.941613
Target:  5'- uGACGCGGcagGGGCGCGGggACCcCG-UGUGg -3'
miRNA:   3'- -CUGUGCC---UCUGCGCU--UGGuGCgACAC- -5'
14326 5' -55.5 NC_003521.1 + 201580 0.68 0.91067
Target:  5'- cGGCugGGGcuGAacgccCGCGGGCCAcCGCUGUc -3'
miRNA:   3'- -CUGugCCU--CU-----GCGCUUGGU-GCGACAc -5'
14326 5' -55.5 NC_003521.1 + 197354 0.67 0.945985
Target:  5'- aGCACGGccgccGCGCuGGCC-CGCUGUGa -3'
miRNA:   3'- cUGUGCCuc---UGCGcUUGGuGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 192048 0.69 0.871758
Target:  5'- uGCGCGGcAGACGCGGcguCCGCGgcgguUUGUGa -3'
miRNA:   3'- cUGUGCC-UCUGCGCUu--GGUGC-----GACAC- -5'
14326 5' -55.5 NC_003521.1 + 191247 0.67 0.957785
Target:  5'- gGAgGCGGcGcCGCGGcCCACGCggcagGUGg -3'
miRNA:   3'- -CUgUGCCuCuGCGCUuGGUGCGa----CAC- -5'
14326 5' -55.5 NC_003521.1 + 189104 0.74 0.658238
Target:  5'- cGAguCGGAcGACGaggaGACCACGCUGUGg -3'
miRNA:   3'- -CUguGCCU-CUGCgc--UUGGUGCGACAC- -5'
14326 5' -55.5 NC_003521.1 + 187611 0.66 0.973296
Target:  5'- gGGCACGGccugccGGGCGagcCGGGCCGCGCg--- -3'
miRNA:   3'- -CUGUGCC------UCUGC---GCUUGGUGCGacac -5'
14326 5' -55.5 NC_003521.1 + 183414 0.67 0.950135
Target:  5'- cGAgACGGuGG-GCGAccgcACgGCGCUGUGg -3'
miRNA:   3'- -CUgUGCCuCUgCGCU----UGgUGCGACAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.