miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14328 5' -55.5 NC_003521.1 + 207046 0.72 0.784204
Target:  5'- gUGGCUGggCCgCAGGCCGGaGGCGuUGCa -3'
miRNA:   3'- -ACUGGCaaGG-GUCUGGCUaCUGC-GCG- -5'
14328 5' -55.5 NC_003521.1 + 202156 0.67 0.950043
Target:  5'- -cGCCGag-CCAGACCGcagGACGCGg -3'
miRNA:   3'- acUGGCaagGGUCUGGCua-CUGCGCg -5'
14328 5' -55.5 NC_003521.1 + 200732 0.66 0.975599
Target:  5'- -cGCgGUUUUCAGG--GGUGACGCGCg -3'
miRNA:   3'- acUGgCAAGGGUCUggCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 200482 0.68 0.941587
Target:  5'- -cGCCGUgaUCCUGGccaaACUGgcGGCGCGCa -3'
miRNA:   3'- acUGGCA--AGGGUC----UGGCuaCUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 200371 0.66 0.967492
Target:  5'- --uCCGUUCCgC-GACCGGgcuagaGCGCGCg -3'
miRNA:   3'- acuGGCAAGG-GuCUGGCUac----UGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 198683 0.67 0.947598
Target:  5'- cGGCgUGUcUCCCGgcacguugaaagucuGACCGcguuUGACGCGCg -3'
miRNA:   3'- aCUG-GCA-AGGGU---------------CUGGCu---ACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 198201 0.67 0.953948
Target:  5'- cUGACgUGUUCCCAGcggcccguACCGucacgcUGuCGCGCu -3'
miRNA:   3'- -ACUG-GCAAGGGUC--------UGGCu-----ACuGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 197927 0.73 0.700246
Target:  5'- -cGCUGggCuCCAGAUCGAcgGGCGCGCg -3'
miRNA:   3'- acUGGCaaG-GGUCUGGCUa-CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 195814 0.71 0.818578
Target:  5'- cGGCCGUgggaucggaUUCCAGAUCGAgcgaGAucuCGCGCg -3'
miRNA:   3'- aCUGGCA---------AGGGUCUGGCUa---CU---GCGCG- -5'
14328 5' -55.5 NC_003521.1 + 191496 0.67 0.94883
Target:  5'- aGACgGcaUUCCCAgagacgucgaaugcGACCGGggcgcucGACGCGCu -3'
miRNA:   3'- aCUGgC--AAGGGU--------------CUGGCUa------CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 191212 0.69 0.897705
Target:  5'- -cGCCGUguccuccgcgucCCCAGcGCCGGUGACGCc- -3'
miRNA:   3'- acUGGCAa-----------GGGUC-UGGCUACUGCGcg -5'
14328 5' -55.5 NC_003521.1 + 187206 0.7 0.842736
Target:  5'- aUGACCGUgcaCgGGACCG-UGACuCGCu -3'
miRNA:   3'- -ACUGGCAag-GgUCUGGCuACUGcGCG- -5'
14328 5' -55.5 NC_003521.1 + 186496 0.66 0.967492
Target:  5'- gUGcACCGUgcgCCUgguGACgGAgcacGACGCGCu -3'
miRNA:   3'- -AC-UGGCAa--GGGu--CUGgCUa---CUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 184731 0.68 0.941587
Target:  5'- aGACCGUaCCCG--UCaGUGGCGUGCa -3'
miRNA:   3'- aCUGGCAaGGGUcuGGcUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 183182 0.66 0.973081
Target:  5'- -cGCCGUcccgUCCCGuuucGGCCcccGUGACGUGCc -3'
miRNA:   3'- acUGGCA----AGGGU----CUGGc--UACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 181072 0.66 0.975599
Target:  5'- gUGugCaggCCCAGua-GGUGACGUGCu -3'
miRNA:   3'- -ACugGcaaGGGUCuggCUACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 180544 0.69 0.892636
Target:  5'- -cACCGUcUCCgCGGcguACCGggGugGCGCg -3'
miRNA:   3'- acUGGCA-AGG-GUC---UGGCuaCugCGCG- -5'
14328 5' -55.5 NC_003521.1 + 179186 0.67 0.953948
Target:  5'- aGugCGgUCCCAGaaaGCCGGaGGCGCu- -3'
miRNA:   3'- aCugGCaAGGGUC---UGGCUaCUGCGcg -5'
14328 5' -55.5 NC_003521.1 + 175172 0.69 0.916594
Target:  5'- gGAUggCGUUCuCCAGGucCUGGcUGGCGCGCg -3'
miRNA:   3'- aCUG--GCAAG-GGUCU--GGCU-ACUGCGCG- -5'
14328 5' -55.5 NC_003521.1 + 171872 0.74 0.680794
Target:  5'- cUGGCCGUcUCCCGGACCa--GACGCu- -3'
miRNA:   3'- -ACUGGCA-AGGGUCUGGcuaCUGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.