miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14338 3' -54 NC_003521.1 + 127995 0.66 0.986073
Target:  5'- ---aCCACGAAGUccugcuucaucuCGUUCACCGUGc- -3'
miRNA:   3'- gagaGGUGCUUCG------------GCAGGUGGCAUuu -5'
14338 3' -54 NC_003521.1 + 28970 0.66 0.986073
Target:  5'- uCUgUCCGCGAucguGGUCG-CUGCCGUAc- -3'
miRNA:   3'- -GAgAGGUGCU----UCGGCaGGUGGCAUuu -5'
14338 3' -54 NC_003521.1 + 149147 0.66 0.986073
Target:  5'- --aUCCACGAcGCCGUggCCACCu---- -3'
miRNA:   3'- gagAGGUGCUuCGGCA--GGUGGcauuu -5'
14338 3' -54 NC_003521.1 + 32498 0.66 0.986073
Target:  5'- gUCgCCGCGAcAGUCGUCCAgguacUCGUAGGu -3'
miRNA:   3'- gAGaGGUGCU-UCGGCAGGU-----GGCAUUU- -5'
14338 3' -54 NC_003521.1 + 4231 0.66 0.986073
Target:  5'- gUCggagCCcCGAGGCUGgCUGCCGUGAGa -3'
miRNA:   3'- gAGa---GGuGCUUCGGCaGGUGGCAUUU- -5'
14338 3' -54 NC_003521.1 + 140200 0.66 0.985908
Target:  5'- -gCUCCugGAucuuggcGGCCGagUCGCCGUGc- -3'
miRNA:   3'- gaGAGGugCU-------UCGGCa-GGUGGCAUuu -5'
14338 3' -54 NC_003521.1 + 53215 0.66 0.98436
Target:  5'- gCUCgcCCugGcAGGCCGUgcCCACCGgcAGc -3'
miRNA:   3'- -GAGa-GGugC-UUCGGCA--GGUGGCauUU- -5'
14338 3' -54 NC_003521.1 + 129646 0.66 0.98436
Target:  5'- --gUCCGCGgcGCCGU-CGCCGg--- -3'
miRNA:   3'- gagAGGUGCuuCGGCAgGUGGCauuu -5'
14338 3' -54 NC_003521.1 + 165924 0.66 0.982491
Target:  5'- -aCUCCACc--GCCG-CCACCGUc-- -3'
miRNA:   3'- gaGAGGUGcuuCGGCaGGUGGCAuuu -5'
14338 3' -54 NC_003521.1 + 88730 0.66 0.982491
Target:  5'- gUCUCCuCGcaGAGCCGgcgcacgUCGCCGUGGu -3'
miRNA:   3'- gAGAGGuGC--UUCGGCa------GGUGGCAUUu -5'
14338 3' -54 NC_003521.1 + 110569 0.66 0.982491
Target:  5'- ---cCCACGuAGUCGUCCACCu---- -3'
miRNA:   3'- gagaGGUGCuUCGGCAGGUGGcauuu -5'
14338 3' -54 NC_003521.1 + 54275 0.66 0.98046
Target:  5'- uUCUCCACGGcgaagaGGCCGUugcggcuggCCA-CGUAGAg -3'
miRNA:   3'- gAGAGGUGCU------UCGGCA---------GGUgGCAUUU- -5'
14338 3' -54 NC_003521.1 + 140248 0.66 0.98046
Target:  5'- -cCUCCGCGucGUCGUCCuccUCGUGc- -3'
miRNA:   3'- gaGAGGUGCuuCGGCAGGu--GGCAUuu -5'
14338 3' -54 NC_003521.1 + 197184 0.66 0.98046
Target:  5'- gCUCUCCgGCGGcGGCCG-CCGCCu---- -3'
miRNA:   3'- -GAGAGG-UGCU-UCGGCaGGUGGcauuu -5'
14338 3' -54 NC_003521.1 + 13920 0.66 0.978257
Target:  5'- ---gCCGCgGAGGCCGcgcuggCCGCCGUGGu -3'
miRNA:   3'- gagaGGUG-CUUCGGCa-----GGUGGCAUUu -5'
14338 3' -54 NC_003521.1 + 142610 0.66 0.978257
Target:  5'- cCUC-CCACGccGCUGcCCGCCGa--- -3'
miRNA:   3'- -GAGaGGUGCuuCGGCaGGUGGCauuu -5'
14338 3' -54 NC_003521.1 + 49334 0.67 0.975876
Target:  5'- gUCUCUggGAAuGCCGUCUGCgCGUGu- -3'
miRNA:   3'- gAGAGGugCUU-CGGCAGGUG-GCAUuu -5'
14338 3' -54 NC_003521.1 + 61892 0.67 0.975876
Target:  5'- -gCUCCAgGAAGCCucgUCGCCGUc-- -3'
miRNA:   3'- gaGAGGUgCUUCGGca-GGUGGCAuuu -5'
14338 3' -54 NC_003521.1 + 195934 0.67 0.975876
Target:  5'- aCUCggaCAU--AGCCGUCCugCGUGGg -3'
miRNA:   3'- -GAGag-GUGcuUCGGCAGGugGCAUUu -5'
14338 3' -54 NC_003521.1 + 23611 0.67 0.97331
Target:  5'- cCUCUUCGCGAucuGCa--CCGCCGUGGc -3'
miRNA:   3'- -GAGAGGUGCUu--CGgcaGGUGGCAUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.