Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14360 | 5' | -59.9 | NC_003521.1 | + | 32191 | 0.71 | 0.570242 |
Target: 5'- ---gCUGCGGGUCGGGCaUGGUggggauGGCUCg -3' miRNA: 3'- gaugGACGCCCAGUUCG-GCCA------CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 19476 | 0.71 | 0.589377 |
Target: 5'- ---gCUGCGcGGcCAGGUgcaGGUGGCCCg -3' miRNA: 3'- gaugGACGC-CCaGUUCGg--CCACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 207272 | 0.71 | 0.598988 |
Target: 5'- gUGCCUGCG--UCAGGCCGGccGCCUu -3' miRNA: 3'- gAUGGACGCccAGUUCGGCCacCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 177985 | 0.7 | 0.618271 |
Target: 5'- -cACCUGcCGGGUCAgagAGCgGGccauGCCCa -3' miRNA: 3'- gaUGGAC-GCCCAGU---UCGgCCac--CGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 181199 | 0.7 | 0.627929 |
Target: 5'- -cGCCUGCGagccgcGGUCGccGCCGG-GGCCg -3' miRNA: 3'- gaUGGACGC------CCAGUu-CGGCCaCCGGg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 179985 | 0.7 | 0.627929 |
Target: 5'- -cACCUGCGGG--AAGuCCuGGUGGCUa -3' miRNA: 3'- gaUGGACGCCCagUUC-GG-CCACCGGg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 113687 | 0.7 | 0.646283 |
Target: 5'- -cGCCUGCGGGcugggacucaaccUCAAgacgcuGCUGGUGGaCCUc -3' miRNA: 3'- gaUGGACGCCC-------------AGUU------CGGCCACC-GGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 151784 | 0.7 | 0.647248 |
Target: 5'- -cGCCUGCaGGUacAGCaugaaGGUGGCCg -3' miRNA: 3'- gaUGGACGcCCAguUCGg----CCACCGGg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 180855 | 0.7 | 0.647248 |
Target: 5'- -aGCC-GCGGGUCAGGCgGGcguugUGGCg- -3' miRNA: 3'- gaUGGaCGCCCAGUUCGgCC-----ACCGgg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 100227 | 0.7 | 0.656895 |
Target: 5'- -gGCCgGCGaGGUgGAGCUGGgcgagGuGCCCg -3' miRNA: 3'- gaUGGaCGC-CCAgUUCGGCCa----C-CGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 88663 | 0.69 | 0.666524 |
Target: 5'- -gGCC-GCcaGGUCGgugGGCCGGcGGCCCg -3' miRNA: 3'- gaUGGaCGc-CCAGU---UCGGCCaCCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 13868 | 0.69 | 0.679962 |
Target: 5'- --cUCUGCGGGcggcgccgccauggaUUucGCCGGggGGCCCg -3' miRNA: 3'- gauGGACGCCC---------------AGuuCGGCCa-CCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 139313 | 0.69 | 0.685701 |
Target: 5'- -cGCCUGCuGGUC-GGCCGcGUcuGGCCg -3' miRNA: 3'- gaUGGACGcCCAGuUCGGC-CA--CCGGg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 128507 | 0.69 | 0.692379 |
Target: 5'- -gGCCUGCgacagcgagucgcuGGG-CAGGUgCGGcUGGCCCg -3' miRNA: 3'- gaUGGACG--------------CCCaGUUCG-GCC-ACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 112979 | 0.69 | 0.695234 |
Target: 5'- cCUGCCcGaCGGG-CuggcGCCGG-GGCCCu -3' miRNA: 3'- -GAUGGaC-GCCCaGuu--CGGCCaCCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 239444 | 0.69 | 0.70472 |
Target: 5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3' miRNA: 3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 207149 | 0.69 | 0.70472 |
Target: 5'- uUACgUGCGGGcCAcGGCCGGUcGCUg -3' miRNA: 3'- gAUGgACGCCCaGU-UCGGCCAcCGGg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 186905 | 0.69 | 0.70472 |
Target: 5'- gCUACCUGacguccaaGGGgggcGCCGGUGGCg- -3' miRNA: 3'- -GAUGGACg-------CCCaguuCGGCCACCGgg -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 39216 | 0.69 | 0.70472 |
Target: 5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3' miRNA: 3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5' |
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14360 | 5' | -59.9 | NC_003521.1 | + | 153422 | 0.69 | 0.714151 |
Target: 5'- -cACCgGCGuGGUCAgcagcAGCCGGUcgcgcucguaGGCCa -3' miRNA: 3'- gaUGGaCGC-CCAGU-----UCGGCCA----------CCGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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