miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 186905 0.69 0.70472
Target:  5'- gCUACCUGacguccaaGGGgggcGCCGGUGGCg- -3'
miRNA:   3'- -GAUGGACg-------CCCaguuCGGCCACCGgg -5'
14360 5' -59.9 NC_003521.1 + 184348 0.67 0.795298
Target:  5'- aCUGCCUcuuCGGG-CGGGCCG-UGGCgCg -3'
miRNA:   3'- -GAUGGAc--GCCCaGUUCGGCcACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 181199 0.7 0.627929
Target:  5'- -cGCCUGCGagccgcGGUCGccGCCGG-GGCCg -3'
miRNA:   3'- gaUGGACGC------CCAGUu-CGGCCaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 180855 0.7 0.647248
Target:  5'- -aGCC-GCGGGUCAGGCgGGcguugUGGCg- -3'
miRNA:   3'- gaUGGaCGCCCAGUUCGgCC-----ACCGgg -5'
14360 5' -59.9 NC_003521.1 + 179985 0.7 0.627929
Target:  5'- -cACCUGCGGG--AAGuCCuGGUGGCUa -3'
miRNA:   3'- gaUGGACGCCCagUUC-GG-CCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 177985 0.7 0.618271
Target:  5'- -cACCUGcCGGGUCAgagAGCgGGccauGCCCa -3'
miRNA:   3'- gaUGGAC-GCCCAGU---UCGgCCac--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 173575 0.67 0.786706
Target:  5'- cCUGCCa-CGGGUCGAucuGCUGGUcccaGGCCa -3'
miRNA:   3'- -GAUGGacGCCCAGUU---CGGCCA----CCGGg -5'
14360 5' -59.9 NC_003521.1 + 172345 0.67 0.820258
Target:  5'- --uCCUGUGGcacacGUCGGGCgGGUGGgUCa -3'
miRNA:   3'- gauGGACGCC-----CAGUUCGgCCACCgGG- -5'
14360 5' -59.9 NC_003521.1 + 171216 0.67 0.820258
Target:  5'- -cGCuCUGCGGcaGUC-AGCgGGUGGUCa -3'
miRNA:   3'- gaUG-GACGCC--CAGuUCGgCCACCGGg -5'
14360 5' -59.9 NC_003521.1 + 168736 0.68 0.751175
Target:  5'- uUAUCgGC-GGUCAgcacGGCCuGGUGGUCCg -3'
miRNA:   3'- gAUGGaCGcCCAGU----UCGG-CCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 168157 0.68 0.731892
Target:  5'- -gGCCUGCGGcguaugcggcauaGUCugcgugauGAGCUGcUGGCCCg -3'
miRNA:   3'- gaUGGACGCC-------------CAG--------UUCGGCcACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 166087 0.67 0.810428
Target:  5'- -gGCCauaGCGGGagCGGGCCGGcagguucacgcgGGCCUg -3'
miRNA:   3'- gaUGGa--CGCCCa-GUUCGGCCa-----------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 161744 0.67 0.812081
Target:  5'- -cGCCaGCGuGGggGAGCUGGUG-CCCg -3'
miRNA:   3'- gaUGGaCGC-CCagUUCGGCCACcGGG- -5'
14360 5' -59.9 NC_003521.1 + 161499 0.66 0.851376
Target:  5'- -gACCcugGUGGGUCGcguGgUGG-GGCCCa -3'
miRNA:   3'- gaUGGa--CGCCCAGUu--CgGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 160328 0.67 0.812081
Target:  5'- -aGCC-GUGGG-C-GGCgCGGUGGCCUc -3'
miRNA:   3'- gaUGGaCGCCCaGuUCG-GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 156174 0.72 0.495655
Target:  5'- -cGCCUGUGcGGcaUCucGCCGGUGGCgCg -3'
miRNA:   3'- gaUGGACGC-CC--AGuuCGGCCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 155492 0.68 0.732819
Target:  5'- -gGCCUGCGG--CGGGCCGcG-GGCCa -3'
miRNA:   3'- gaUGGACGCCcaGUUCGGC-CaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 153422 0.69 0.714151
Target:  5'- -cACCgGCGuGGUCAgcagcAGCCGGUcgcgcucguaGGCCa -3'
miRNA:   3'- gaUGGaCGC-CCAGU-----UCGGCCA----------CCGGg -5'
14360 5' -59.9 NC_003521.1 + 153076 0.72 0.495655
Target:  5'- -cGCC-GcCGGGgccCGGGCCGG-GGCCCa -3'
miRNA:   3'- gaUGGaC-GCCCa--GUUCGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 151784 0.7 0.647248
Target:  5'- -cGCCUGCaGGUacAGCaugaaGGUGGCCg -3'
miRNA:   3'- gaUGGACGcCCAguUCGg----CCACCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.