miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14360 5' -59.9 NC_003521.1 + 155492 0.68 0.732819
Target:  5'- -gGCCUGCGG--CGGGCCGcG-GGCCa -3'
miRNA:   3'- gaUGGACGCCcaGUUCGGC-CaCCGGg -5'
14360 5' -59.9 NC_003521.1 + 39216 0.69 0.70472
Target:  5'- -aGCagcGCGGGcUCGGGgacagCGGUGGCCCg -3'
miRNA:   3'- gaUGga-CGCCC-AGUUCg----GCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 19476 0.71 0.589377
Target:  5'- ---gCUGCGcGGcCAGGUgcaGGUGGCCCg -3'
miRNA:   3'- gaugGACGC-CCaGUUCGg--CCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 210013 0.73 0.451331
Target:  5'- -----cGCGGGUUucGCCGGcgGGCCCu -3'
miRNA:   3'- gauggaCGCCCAGuuCGGCCa-CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 161744 0.67 0.812081
Target:  5'- -cGCCaGCGuGGggGAGCUGGUG-CCCg -3'
miRNA:   3'- gaUGGaCGC-CCagUUCGGCCACcGGG- -5'
14360 5' -59.9 NC_003521.1 + 59699 0.67 0.786706
Target:  5'- -aACCUGgacuCGGGUC--GCCuGGUGGCgCa -3'
miRNA:   3'- gaUGGAC----GCCCAGuuCGG-CCACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 112979 0.69 0.695234
Target:  5'- cCUGCCcGaCGGG-CuggcGCCGG-GGCCCu -3'
miRNA:   3'- -GAUGGaC-GCCCaGuu--CGGCCaCCGGG- -5'
14360 5' -59.9 NC_003521.1 + 88780 0.75 0.385232
Target:  5'- -gACCUGCGGGUgAAGCaccgcugcggccUGGUGaaGCCCg -3'
miRNA:   3'- gaUGGACGCCCAgUUCG------------GCCAC--CGGG- -5'
14360 5' -59.9 NC_003521.1 + 38235 0.68 0.760217
Target:  5'- -gGCCUcgGCGGG-CGGGgCGGagacgcGGCCCa -3'
miRNA:   3'- gaUGGA--CGCCCaGUUCgGCCa-----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 187617 0.75 0.369736
Target:  5'- -gGCCUGcCGGG-CGAGCCGGgccgcgcgccgcUGGCCa -3'
miRNA:   3'- gaUGGAC-GCCCaGUUCGGCC------------ACCGGg -5'
14360 5' -59.9 NC_003521.1 + 186905 0.69 0.70472
Target:  5'- gCUACCUGacguccaaGGGgggcGCCGGUGGCg- -3'
miRNA:   3'- -GAUGGACg-------CCCaguuCGGCCACCGgg -5'
14360 5' -59.9 NC_003521.1 + 149423 0.68 0.750265
Target:  5'- --cCCUGUGGGccgggauUUggGUCGGggguccgGGCCCg -3'
miRNA:   3'- gauGGACGCCC-------AGuuCGGCCa------CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 113687 0.7 0.646283
Target:  5'- -cGCCUGCGGGcugggacucaaccUCAAgacgcuGCUGGUGGaCCUc -3'
miRNA:   3'- gaUGGACGCCC-------------AGUU------CGGCCACC-GGG- -5'
14360 5' -59.9 NC_003521.1 + 207272 0.71 0.598988
Target:  5'- gUGCCUGCG--UCAGGCCGGccGCCUu -3'
miRNA:   3'- gAUGGACGCccAGUUCGGCCacCGGG- -5'
14360 5' -59.9 NC_003521.1 + 7961 0.72 0.523175
Target:  5'- -cGCC-GCGGuGUCGcGGCCGGgagGGUCCg -3'
miRNA:   3'- gaUGGaCGCC-CAGU-UCGGCCa--CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 77956 0.73 0.460026
Target:  5'- --cCCUGCuGGGUCuugGAGCCGGccgcgGGCUCg -3'
miRNA:   3'- gauGGACG-CCCAG---UUCGGCCa----CCGGG- -5'
14360 5' -59.9 NC_003521.1 + 203353 0.67 0.812081
Target:  5'- --cCCUGCGGcacca--CGGUGGCCCg -3'
miRNA:   3'- gauGGACGCCcaguucgGCCACCGGG- -5'
14360 5' -59.9 NC_003521.1 + 195686 0.67 0.812081
Target:  5'- -gAUCUGCGGGaugUCcuGCCGGUgcacgaacauacGGCgCCg -3'
miRNA:   3'- gaUGGACGCCC---AGuuCGGCCA------------CCG-GG- -5'
14360 5' -59.9 NC_003521.1 + 184348 0.67 0.795298
Target:  5'- aCUGCCUcuuCGGG-CGGGCCG-UGGCgCg -3'
miRNA:   3'- -GAUGGAc--GCCCaGUUCGGCcACCGgG- -5'
14360 5' -59.9 NC_003521.1 + 88082 0.67 0.786706
Target:  5'- gCUGCCcGUGGaggaCAaccGGCUGGUGGCCa -3'
miRNA:   3'- -GAUGGaCGCCca--GU---UCGGCCACCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.