miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14367 3' -52 NC_003521.1 + 115970 0.66 0.996339
Target:  5'- gGCGUUGuccGAGACGCCcagguuguucaUGGucucgcgcAGGAGCa -3'
miRNA:   3'- aUGCAAC---UUCUGUGG-----------ACCu-------UCCUCGc -5'
14367 3' -52 NC_003521.1 + 24155 0.66 0.996281
Target:  5'- cACGggGuacucgcGGGGCACUcGGAAaGGAGCGa -3'
miRNA:   3'- aUGCaaC-------UUCUGUGGaCCUU-CCUCGC- -5'
14367 3' -52 NC_003521.1 + 102722 0.66 0.995727
Target:  5'- gACGUaGAgcacgcAGACcucgGCCUGGGAGGgccAGCGc -3'
miRNA:   3'- aUGCAaCU------UCUG----UGGACCUUCC---UCGC- -5'
14367 3' -52 NC_003521.1 + 100576 0.66 0.995727
Target:  5'- cACGagGAGGACGacgaCgcGGAGGGAGCc -3'
miRNA:   3'- aUGCaaCUUCUGUg---Ga-CCUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 93602 0.66 0.995727
Target:  5'- aACGcUGAGGAC-CC-GGcuGGGGCGa -3'
miRNA:   3'- aUGCaACUUCUGuGGaCCuuCCUCGC- -5'
14367 3' -52 NC_003521.1 + 190498 0.66 0.995033
Target:  5'- aACGggccGAGGACccgcugccucCCUGGcuGAGGAGCGa -3'
miRNA:   3'- aUGCaa--CUUCUGu---------GGACC--UUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 177969 0.66 0.994252
Target:  5'- gAUGUcUGAGGcggggcACACCUGGGGcGGuGCGg -3'
miRNA:   3'- aUGCA-ACUUC------UGUGGACCUU-CCuCGC- -5'
14367 3' -52 NC_003521.1 + 113567 0.66 0.994084
Target:  5'- cGCGagGAGGACGCgguggggCUGGGccucgggggcaacGGGGGCGg -3'
miRNA:   3'- aUGCaaCUUCUGUG-------GACCU-------------UCCUCGC- -5'
14367 3' -52 NC_003521.1 + 84774 0.66 0.993374
Target:  5'- gACGUUGuuGGCACCgccgaagcaGAGGGAGgGc -3'
miRNA:   3'- aUGCAACuuCUGUGGac-------CUUCCUCgC- -5'
14367 3' -52 NC_003521.1 + 87793 0.66 0.993374
Target:  5'- -uCGUcGGucucGGGCgGCCUGGGccAGGAGCGg -3'
miRNA:   3'- auGCAaCU----UCUG-UGGACCU--UCCUCGC- -5'
14367 3' -52 NC_003521.1 + 86307 0.66 0.993374
Target:  5'- cGCaGUUGAGGuuggccgccaGCACCUGGAugcuGGAGg- -3'
miRNA:   3'- aUG-CAACUUC----------UGUGGACCUu---CCUCgc -5'
14367 3' -52 NC_003521.1 + 167689 0.66 0.993374
Target:  5'- uUGCGgUGAcGACGCUcgUGGAGGaGGCGg -3'
miRNA:   3'- -AUGCaACUuCUGUGG--ACCUUCcUCGC- -5'
14367 3' -52 NC_003521.1 + 174211 0.67 0.992392
Target:  5'- cACGUUGggGuCGCgCgggucgGGcAGGGGCGc -3'
miRNA:   3'- aUGCAACuuCuGUG-Ga-----CCuUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 156479 0.67 0.991297
Target:  5'- gGCGgaGGAGGCGCU--GAGGGAGUa -3'
miRNA:   3'- aUGCaaCUUCUGUGGacCUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 180902 0.67 0.991181
Target:  5'- cACGUcGGAGACcaggaagGCUUuGAGGGAGCGu -3'
miRNA:   3'- aUGCAaCUUCUG-------UGGAcCUUCCUCGC- -5'
14367 3' -52 NC_003521.1 + 131899 0.67 0.990082
Target:  5'- aGCGaucUGGAGGCcauCCUGcuGAAGGAGCu -3'
miRNA:   3'- aUGCa--ACUUCUGu--GGAC--CUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 60500 0.67 0.988737
Target:  5'- cACGcUGGuAGGCuCCcGGGAGGAGCu -3'
miRNA:   3'- aUGCaACU-UCUGuGGaCCUUCCUCGc -5'
14367 3' -52 NC_003521.1 + 87766 0.67 0.987255
Target:  5'- gGCGgcgGAGGAgGCCUGGggGccGCc -3'
miRNA:   3'- aUGCaa-CUUCUgUGGACCuuCcuCGc -5'
14367 3' -52 NC_003521.1 + 48551 0.67 0.987255
Target:  5'- aACGgcgUGGAGACGCCgcugGuGAAGGuGaCGg -3'
miRNA:   3'- aUGCa--ACUUCUGUGGa---C-CUUCCuC-GC- -5'
14367 3' -52 NC_003521.1 + 126682 0.67 0.987099
Target:  5'- cAgGUUGAGGACGCUgaUGGAGGcgaacaugccgguGAGCa -3'
miRNA:   3'- aUgCAACUUCUGUGG--ACCUUC-------------CUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.