miRNA display CGI


Results 61 - 80 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 224078 0.67 0.817774
Target:  5'- --cGU-CCUCCgGCgggcgCGCGCGCCGGcGg -3'
miRNA:   3'- ccaCGuGGAGGgCGa----GCGCGUGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 148771 0.67 0.817774
Target:  5'- gGGUGC-CCUCggCGgUCGCGC-CgAGGa -3'
miRNA:   3'- -CCACGuGGAGg-GCgAGCGCGuGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 85425 0.67 0.817774
Target:  5'- cGGUGCccaGCCcCCCGCcggccucgUCGUccGCGCCGGc -3'
miRNA:   3'- -CCACG---UGGaGGGCG--------AGCG--CGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 83772 0.67 0.801359
Target:  5'- uGGcgGCGCCcCCCGC-CGCGCuccuCCGa- -3'
miRNA:   3'- -CCa-CGUGGaGGGCGaGCGCGu---GGUcc -5'
14378 5' -60.4 NC_003521.1 + 162913 0.67 0.801359
Target:  5'- gGGUGacggggACCUcaaggagaaCCUGUUCGUGCGCgGGGg -3'
miRNA:   3'- -CCACg-----UGGA---------GGGCGAGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 66348 0.67 0.801359
Target:  5'- --aGCaACUggaUCCCGCUCGCGUGgCCGGcGg -3'
miRNA:   3'- ccaCG-UGG---AGGGCGAGCGCGU-GGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 55736 0.67 0.801359
Target:  5'- --aGCGCCUCCCaGCgcgCGgGCGgCAGc -3'
miRNA:   3'- ccaCGUGGAGGG-CGa--GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 126814 0.67 0.798011
Target:  5'- --cGCACCUCCagcaccuucgcgUGCUCGCccacgaacugcacCGCCAGGa -3'
miRNA:   3'- ccaCGUGGAGG------------GCGAGCGc------------GUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 135342 0.67 0.792948
Target:  5'- gGGuUGCcucCCUCCCGC--GCGCGCCGu- -3'
miRNA:   3'- -CC-ACGu--GGAGGGCGagCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 204851 0.67 0.792948
Target:  5'- aGGUGUAguCCaCCCGgauCUCGgGCACgCAGGu -3'
miRNA:   3'- -CCACGU--GGaGGGC---GAGCgCGUG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 144298 0.67 0.784411
Target:  5'- --cGCugCUgCCGCaCGCGCugCGGu -3'
miRNA:   3'- ccaCGugGAgGGCGaGCGCGugGUCc -5'
14378 5' -60.4 NC_003521.1 + 81169 0.67 0.775753
Target:  5'- gGGUGCGCCg-UUGgUCcaCGCACCAGGc -3'
miRNA:   3'- -CCACGUGGagGGCgAGc-GCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 162628 0.67 0.809637
Target:  5'- --aGCGCCgcgCCCGCUC-CGCACg--- -3'
miRNA:   3'- ccaCGUGGa--GGGCGAGcGCGUGgucc -5'
14378 5' -60.4 NC_003521.1 + 197022 0.67 0.801359
Target:  5'- aGUGCACCUCCU-CUCGUuaGCGagaAGGg -3'
miRNA:   3'- cCACGUGGAGGGcGAGCG--CGUgg-UCC- -5'
14378 5' -60.4 NC_003521.1 + 43547 0.67 0.801359
Target:  5'- --cGC-CCUCCCGCUcccCGC-CGCCGGc -3'
miRNA:   3'- ccaCGuGGAGGGCGA---GCGcGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 156601 0.67 0.792948
Target:  5'- uGGUGCagcgcgGCCUCUCGCgccuggugcugCGCGaCGCCcuGGGc -3'
miRNA:   3'- -CCACG------UGGAGGGCGa----------GCGC-GUGG--UCC- -5'
14378 5' -60.4 NC_003521.1 + 118162 0.68 0.75811
Target:  5'- uGG-GCGCCUCga--UCGCGCuCCAGGa -3'
miRNA:   3'- -CCaCGUGGAGggcgAGCGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 115725 0.68 0.766984
Target:  5'- uGGUGC-CCaUCCCGCagCGCcuGCACCu-- -3'
miRNA:   3'- -CCACGuGG-AGGGCGa-GCG--CGUGGucc -5'
14378 5' -60.4 NC_003521.1 + 171204 0.68 0.766984
Target:  5'- uGGUGCACUgCUCGCUCuGCGgcaguCAgCGGGu -3'
miRNA:   3'- -CCACGUGGaGGGCGAG-CGC-----GUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 43341 0.68 0.766984
Target:  5'- --cGCGCCguccggCCCGC-CGCGCgugaacauccGCCAGa -3'
miRNA:   3'- ccaCGUGGa-----GGGCGaGCGCG----------UGGUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.