Results 61 - 80 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14378 | 5' | -60.4 | NC_003521.1 | + | 224078 | 0.67 | 0.817774 |
Target: 5'- --cGU-CCUCCgGCgggcgCGCGCGCCGGcGg -3' miRNA: 3'- ccaCGuGGAGGgCGa----GCGCGUGGUC-C- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 148771 | 0.67 | 0.817774 |
Target: 5'- gGGUGC-CCUCggCGgUCGCGC-CgAGGa -3' miRNA: 3'- -CCACGuGGAGg-GCgAGCGCGuGgUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 85425 | 0.67 | 0.817774 |
Target: 5'- cGGUGCccaGCCcCCCGCcggccucgUCGUccGCGCCGGc -3' miRNA: 3'- -CCACG---UGGaGGGCG--------AGCG--CGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 83772 | 0.67 | 0.801359 |
Target: 5'- uGGcgGCGCCcCCCGC-CGCGCuccuCCGa- -3' miRNA: 3'- -CCa-CGUGGaGGGCGaGCGCGu---GGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 162913 | 0.67 | 0.801359 |
Target: 5'- gGGUGacggggACCUcaaggagaaCCUGUUCGUGCGCgGGGg -3' miRNA: 3'- -CCACg-----UGGA---------GGGCGAGCGCGUGgUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 66348 | 0.67 | 0.801359 |
Target: 5'- --aGCaACUggaUCCCGCUCGCGUGgCCGGcGg -3' miRNA: 3'- ccaCG-UGG---AGGGCGAGCGCGU-GGUC-C- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 55736 | 0.67 | 0.801359 |
Target: 5'- --aGCGCCUCCCaGCgcgCGgGCGgCAGc -3' miRNA: 3'- ccaCGUGGAGGG-CGa--GCgCGUgGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 126814 | 0.67 | 0.798011 |
Target: 5'- --cGCACCUCCagcaccuucgcgUGCUCGCccacgaacugcacCGCCAGGa -3' miRNA: 3'- ccaCGUGGAGG------------GCGAGCGc------------GUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 135342 | 0.67 | 0.792948 |
Target: 5'- gGGuUGCcucCCUCCCGC--GCGCGCCGu- -3' miRNA: 3'- -CC-ACGu--GGAGGGCGagCGCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 204851 | 0.67 | 0.792948 |
Target: 5'- aGGUGUAguCCaCCCGgauCUCGgGCACgCAGGu -3' miRNA: 3'- -CCACGU--GGaGGGC---GAGCgCGUG-GUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 144298 | 0.67 | 0.784411 |
Target: 5'- --cGCugCUgCCGCaCGCGCugCGGu -3' miRNA: 3'- ccaCGugGAgGGCGaGCGCGugGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 81169 | 0.67 | 0.775753 |
Target: 5'- gGGUGCGCCg-UUGgUCcaCGCACCAGGc -3' miRNA: 3'- -CCACGUGGagGGCgAGc-GCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 162628 | 0.67 | 0.809637 |
Target: 5'- --aGCGCCgcgCCCGCUC-CGCACg--- -3' miRNA: 3'- ccaCGUGGa--GGGCGAGcGCGUGgucc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 197022 | 0.67 | 0.801359 |
Target: 5'- aGUGCACCUCCU-CUCGUuaGCGagaAGGg -3' miRNA: 3'- cCACGUGGAGGGcGAGCG--CGUgg-UCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 43547 | 0.67 | 0.801359 |
Target: 5'- --cGC-CCUCCCGCUcccCGC-CGCCGGc -3' miRNA: 3'- ccaCGuGGAGGGCGA---GCGcGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 156601 | 0.67 | 0.792948 |
Target: 5'- uGGUGCagcgcgGCCUCUCGCgccuggugcugCGCGaCGCCcuGGGc -3' miRNA: 3'- -CCACG------UGGAGGGCGa----------GCGC-GUGG--UCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 118162 | 0.68 | 0.75811 |
Target: 5'- uGG-GCGCCUCga--UCGCGCuCCAGGa -3' miRNA: 3'- -CCaCGUGGAGggcgAGCGCGuGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 115725 | 0.68 | 0.766984 |
Target: 5'- uGGUGC-CCaUCCCGCagCGCcuGCACCu-- -3' miRNA: 3'- -CCACGuGG-AGGGCGa-GCG--CGUGGucc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 171204 | 0.68 | 0.766984 |
Target: 5'- uGGUGCACUgCUCGCUCuGCGgcaguCAgCGGGu -3' miRNA: 3'- -CCACGUGGaGGGCGAG-CGC-----GUgGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 43341 | 0.68 | 0.766984 |
Target: 5'- --cGCGCCguccggCCCGC-CGCGCgugaacauccGCCAGa -3' miRNA: 3'- ccaCGUGGa-----GGGCGaGCGCG----------UGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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