miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 212237 0.66 0.848786
Target:  5'- cGGUGCGCagcagCCCGCcgucCGCGUagucggugGCCGGcGg -3'
miRNA:   3'- -CCACGUGga---GGGCGa---GCGCG--------UGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 127840 0.66 0.8336
Target:  5'- aGGgccccgGCGCCagCCCGUcgggcaggUUGCcCACCAGGa -3'
miRNA:   3'- -CCa-----CGUGGa-GGGCG--------AGCGcGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 75916 0.66 0.848786
Target:  5'- uGG-GCACgUUgUGCUCGCGCACg--- -3'
miRNA:   3'- -CCaCGUGgAGgGCGAGCGCGUGgucc -5'
14378 5' -60.4 NC_003521.1 + 75040 0.66 0.848786
Target:  5'- -cUGCACCUCgUGCgaggaGCACCAGa -3'
miRNA:   3'- ccACGUGGAGgGCGagcg-CGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 172937 0.66 0.848786
Target:  5'- gGGUGCACCUCCa--UC-UGCACCugcugacgguguAGGa -3'
miRNA:   3'- -CCACGUGGAGGgcgAGcGCGUGG------------UCC- -5'
14378 5' -60.4 NC_003521.1 + 214780 0.66 0.841276
Target:  5'- -----cCCUCCCGCUCGC-CGCCGu- -3'
miRNA:   3'- ccacguGGAGGGCGAGCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 45121 0.66 0.841276
Target:  5'- --gGCGCCguaUGUUCGUGCACCGGc -3'
miRNA:   3'- ccaCGUGGaggGCGAGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 121955 0.66 0.841276
Target:  5'- -cUGCACCUCCuCGCcCGUGUgaUAGGu -3'
miRNA:   3'- ccACGUGGAGG-GCGaGCGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 43547 0.67 0.801359
Target:  5'- --cGC-CCUCCCGCUcccCGC-CGCCGGc -3'
miRNA:   3'- ccaCGuGGAGGGCGA---GCGcGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 197022 0.67 0.801359
Target:  5'- aGUGCACCUCCU-CUCGUuaGCGagaAGGg -3'
miRNA:   3'- cCACGUGGAGGGcGAGCG--CGUgg-UCC- -5'
14378 5' -60.4 NC_003521.1 + 162913 0.67 0.801359
Target:  5'- gGGUGacggggACCUcaaggagaaCCUGUUCGUGCGCgGGGg -3'
miRNA:   3'- -CCACg-----UGGA---------GGGCGAGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 66348 0.67 0.801359
Target:  5'- --aGCaACUggaUCCCGCUCGCGUGgCCGGcGg -3'
miRNA:   3'- ccaCG-UGG---AGGGCGAGCGCGU-GGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 55736 0.67 0.801359
Target:  5'- --aGCGCCUCCCaGCgcgCGgGCGgCAGc -3'
miRNA:   3'- ccaCGUGGAGGG-CGa--GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 126814 0.67 0.798011
Target:  5'- --cGCACCUCCagcaccuucgcgUGCUCGCccacgaacugcacCGCCAGGa -3'
miRNA:   3'- ccaCGUGGAGG------------GCGAGCGc------------GUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 135342 0.67 0.792948
Target:  5'- gGGuUGCcucCCUCCCGC--GCGCGCCGu- -3'
miRNA:   3'- -CC-ACGu--GGAGGGCGagCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 204851 0.67 0.792948
Target:  5'- aGGUGUAguCCaCCCGgauCUCGgGCACgCAGGu -3'
miRNA:   3'- -CCACGU--GGaGGGC---GAGCgCGUG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 156601 0.67 0.792948
Target:  5'- uGGUGCagcgcgGCCUCUCGCgccuggugcugCGCGaCGCCcuGGGc -3'
miRNA:   3'- -CCACG------UGGAGGGCGa----------GCGC-GUGG--UCC- -5'
14378 5' -60.4 NC_003521.1 + 144298 0.67 0.784411
Target:  5'- --cGCugCUgCCGCaCGCGCugCGGu -3'
miRNA:   3'- ccaCGugGAgGGCGaGCGCGugGUCc -5'
14378 5' -60.4 NC_003521.1 + 81169 0.67 0.775753
Target:  5'- gGGUGCGCCg-UUGgUCcaCGCACCAGGc -3'
miRNA:   3'- -CCACGUGGagGGCgAGc-GCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 130554 0.67 0.775753
Target:  5'- --aGCGCCUUCgUGCUCaGCcgcuucaaGCGCCAGGu -3'
miRNA:   3'- ccaCGUGGAGG-GCGAG-CG--------CGUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.