Results 41 - 60 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14378 | 5' | -60.4 | NC_003521.1 | + | 211739 | 0.7 | 0.617494 |
Target: 5'- aGUGCGCCaCCaugaGCUCGaUGCccACCAGGa -3' miRNA: 3'- cCACGUGGaGGg---CGAGC-GCG--UGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 226819 | 0.7 | 0.625141 |
Target: 5'- cGGUacaGCGCCaugggguccucgCCCGC-CGcCGCGCCGGGc -3' miRNA: 3'- -CCA---CGUGGa-----------GGGCGaGC-GCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 2389 | 0.7 | 0.636616 |
Target: 5'- -cUGCGCCUCCUGCccgaccUCGaccgcgaGCACUGGGa -3' miRNA: 3'- ccACGUGGAGGGCG------AGCg------CGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 16387 | 0.7 | 0.636616 |
Target: 5'- --cGCACCUggaCCGCUCGCcCACCAc- -3' miRNA: 3'- ccaCGUGGAg--GGCGAGCGcGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 202616 | 0.7 | 0.636616 |
Target: 5'- -cUGCGCCUCCUGCccgaccUCGaccgcgaGCACUGGGa -3' miRNA: 3'- ccACGUGGAGGGCG------AGCg------CGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 59651 | 0.7 | 0.636616 |
Target: 5'- uGGUGCGgCagaCGCUgGCGCGCCuGGa -3' miRNA: 3'- -CCACGUgGaggGCGAgCGCGUGGuCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 130820 | 0.7 | 0.646175 |
Target: 5'- gGGUGCACauCUCCCGCcUGCuGgACCGGc -3' miRNA: 3'- -CCACGUG--GAGGGCGaGCG-CgUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 218361 | 0.7 | 0.646175 |
Target: 5'- --aGCGCCaCCCGCUCGCcaaGCgACgCAGGu -3' miRNA: 3'- ccaCGUGGaGGGCGAGCG---CG-UG-GUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 85250 | 0.7 | 0.646175 |
Target: 5'- cGGcGCGCaaauaacuggCUaCCCGCUcCGCGCGCCGGc -3' miRNA: 3'- -CCaCGUG----------GA-GGGCGA-GCGCGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 144180 | 0.7 | 0.646175 |
Target: 5'- --gGCGCCgCCUGC-CGCGCGCUGGa -3' miRNA: 3'- ccaCGUGGaGGGCGaGCGCGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 100085 | 0.7 | 0.649996 |
Target: 5'- cGG-GCGCCUCgaCCGCcgacgaggacUCGCGCgggaugacguucgucACCAGGa -3' miRNA: 3'- -CCaCGUGGAG--GGCG----------AGCGCG---------------UGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 74942 | 0.7 | 0.655725 |
Target: 5'- uGGUGUACCcgccgCCCGagcaCGUGCACCGcuGGa -3' miRNA: 3'- -CCACGUGGa----GGGCga--GCGCGUGGU--CC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 129980 | 0.7 | 0.655725 |
Target: 5'- cGUGCACCgUCgCUGC-CGCuGCGCCGGcGg -3' miRNA: 3'- cCACGUGG-AG-GGCGaGCG-CGUGGUC-C- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 110918 | 0.69 | 0.665258 |
Target: 5'- cGGUGCugUUCcgcacggugCCGUUgGUGCACUGGGu -3' miRNA: 3'- -CCACGugGAG---------GGCGAgCGCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 18721 | 0.69 | 0.674768 |
Target: 5'- --aGCGCCUCgagaCGCUgccgGCGCugCAGGg -3' miRNA: 3'- ccaCGUGGAGg---GCGAg---CGCGugGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 87400 | 0.69 | 0.684247 |
Target: 5'- aGGUGaCGCCga-CGCUCaCGC-CCAGGg -3' miRNA: 3'- -CCAC-GUGGaggGCGAGcGCGuGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 34572 | 0.69 | 0.684247 |
Target: 5'- gGGUGCACCaggCUgaCGC-CGgGCugCAGGc -3' miRNA: 3'- -CCACGUGGa--GG--GCGaGCgCGugGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 204116 | 0.69 | 0.684247 |
Target: 5'- -cUGCGCCUCCaccuGCUCGgGCcaggcGCCGGa -3' miRNA: 3'- ccACGUGGAGGg---CGAGCgCG-----UGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 36746 | 0.69 | 0.684247 |
Target: 5'- cGGUGCccuuCCUCUCGCUguccaaggaCGCGCgugGCCuGGc -3' miRNA: 3'- -CCACGu---GGAGGGCGA---------GCGCG---UGGuCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 103377 | 0.69 | 0.684247 |
Target: 5'- cGGUGCgcgauACCUCCacggGCUCcuGCGCGCUGGu -3' miRNA: 3'- -CCACG-----UGGAGGg---CGAG--CGCGUGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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