miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 66555 0.68 0.75811
Target:  5'- --cGCGCUUCaCCGacCUgGCGCGCCAGc -3'
miRNA:   3'- ccaCGUGGAG-GGC--GAgCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 69414 0.76 0.320848
Target:  5'- cGUGaGCCUCCUGCUgGUGgACCGGGa -3'
miRNA:   3'- cCACgUGGAGGGCGAgCGCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 70845 0.68 0.749138
Target:  5'- --aGCGuCC-CCCGC-CGCGCcucCCAGGa -3'
miRNA:   3'- ccaCGU-GGaGGGCGaGCGCGu--GGUCC- -5'
14378 5' -60.4 NC_003521.1 + 72572 0.68 0.730934
Target:  5'- --aGCGCCUCgUGCggcaaCGCGUuCCAGGc -3'
miRNA:   3'- ccaCGUGGAGgGCGa----GCGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 72596 0.69 0.693689
Target:  5'- --gGCGgCUCCCGCUaGCGCACUg-- -3'
miRNA:   3'- ccaCGUgGAGGGCGAgCGCGUGGucc -5'
14378 5' -60.4 NC_003521.1 + 74609 0.72 0.541858
Target:  5'- cGGcGCGCCUCgCCGC-CGCGCcaacAgCGGGg -3'
miRNA:   3'- -CCaCGUGGAG-GGCGaGCGCG----UgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 74942 0.7 0.655725
Target:  5'- uGGUGUACCcgccgCCCGagcaCGUGCACCGcuGGa -3'
miRNA:   3'- -CCACGUGGa----GGGCga--GCGCGUGGU--CC- -5'
14378 5' -60.4 NC_003521.1 + 75040 0.66 0.848786
Target:  5'- -cUGCACCUCgUGCgaggaGCACCAGa -3'
miRNA:   3'- ccACGUGGAGgGCGagcg-CGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 75916 0.66 0.848786
Target:  5'- uGG-GCACgUUgUGCUCGCGCACg--- -3'
miRNA:   3'- -CCaCGUGgAGgGCGAGCGCGUGgucc -5'
14378 5' -60.4 NC_003521.1 + 76330 0.68 0.746429
Target:  5'- --cGC-CCUUgacgaacucgcaggCCGuCUUGCGCACCAGGu -3'
miRNA:   3'- ccaCGuGGAG--------------GGC-GAGCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 81169 0.67 0.775753
Target:  5'- gGGUGCGCCg-UUGgUCcaCGCACCAGGc -3'
miRNA:   3'- -CCACGUGGagGGCgAGc-GCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 83772 0.67 0.801359
Target:  5'- uGGcgGCGCCcCCCGC-CGCGCuccuCCGa- -3'
miRNA:   3'- -CCa-CGUGGaGGGCGaGCGCGu---GGUcc -5'
14378 5' -60.4 NC_003521.1 + 85222 0.66 0.861157
Target:  5'- cGGUcGcCACCUCCUGCUgcugcucucguugcUGCuGCACCAc- -3'
miRNA:   3'- -CCA-C-GUGGAGGGCGA--------------GCG-CGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 85250 0.7 0.646175
Target:  5'- cGGcGCGCaaauaacuggCUaCCCGCUcCGCGCGCCGGc -3'
miRNA:   3'- -CCaCGUG----------GA-GGGCGA-GCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 85425 0.67 0.817774
Target:  5'- cGGUGCccaGCCcCCCGCcggccucgUCGUccGCGCCGGc -3'
miRNA:   3'- -CCACG---UGGaGGGCG--------AGCG--CGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 85638 0.71 0.569963
Target:  5'- cGUGCACCUCCCccccggcaGC-CGCGgcCGCCAGc -3'
miRNA:   3'- cCACGUGGAGGG--------CGaGCGC--GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 86177 0.67 0.817774
Target:  5'- cGGUGCGCa-CCagCGaCUCGCGgGCCAcGGu -3'
miRNA:   3'- -CCACGUGgaGG--GC-GAGCGCgUGGU-CC- -5'
14378 5' -60.4 NC_003521.1 + 86787 0.72 0.53259
Target:  5'- uGG-GCGCCUgCCGCggcaagaGCauGCACCAGGu -3'
miRNA:   3'- -CCaCGUGGAgGGCGag-----CG--CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 87319 0.66 0.8336
Target:  5'- gGGUGCGg-UCCaCGCUgGCGCugACCAGa -3'
miRNA:   3'- -CCACGUggAGG-GCGAgCGCG--UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 87400 0.69 0.684247
Target:  5'- aGGUGaCGCCga-CGCUCaCGC-CCAGGg -3'
miRNA:   3'- -CCAC-GUGGaggGCGAGcGCGuGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.