miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 87698 0.67 0.7921
Target:  5'- uGGUGgACCaaagccgCCUGCUgccgucgCGCGCGCCcGGc -3'
miRNA:   3'- -CCACgUGGa------GGGCGA-------GCGCGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 88194 0.68 0.757217
Target:  5'- --cGCACgUUCCGCcUGCGCcgccuggugaccaACCAGGg -3'
miRNA:   3'- ccaCGUGgAGGGCGaGCGCG-------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 88827 0.71 0.569963
Target:  5'- -aUGCACUUCUCGCU-GUGCACCAu- -3'
miRNA:   3'- ccACGUGGAGGGCGAgCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 92054 0.73 0.443705
Target:  5'- cGGgGUGCCUCCCGUagcgaUgGCGgACCGGGg -3'
miRNA:   3'- -CCaCGUGGAGGGCG-----AgCGCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 92486 0.66 0.841276
Target:  5'- uGGUGCugACCUUCgugaaCGUgagCGUGCACCuGGu -3'
miRNA:   3'- -CCACG--UGGAGG-----GCGa--GCGCGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 93372 0.66 0.848786
Target:  5'- --cGCGCCaUCCGCUacuucCGCGCGCgCAGc -3'
miRNA:   3'- ccaCGUGGaGGGCGA-----GCGCGUG-GUCc -5'
14378 5' -60.4 NC_003521.1 + 94677 0.66 0.8336
Target:  5'- --cGCucuCCUCgCGCUCGCGgaaaauggccgaCACCAGa -3'
miRNA:   3'- ccaCGu--GGAGgGCGAGCGC------------GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 95177 0.72 0.545581
Target:  5'- aGG-GCACCUCgCGCUCggcGCggaacuccacgcccgGCACCGGGu -3'
miRNA:   3'- -CCaCGUGGAGgGCGAG---CG---------------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 97197 0.67 0.801359
Target:  5'- cGGUGCACCgugaCGUU-GUGCAgCAGGc -3'
miRNA:   3'- -CCACGUGGagg-GCGAgCGCGUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 99012 0.75 0.386693
Target:  5'- uGGUGCugUUgCCGCUCGaGguCCAGGc -3'
miRNA:   3'- -CCACGugGAgGGCGAGCgCguGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 99249 0.66 0.8336
Target:  5'- cGGUGCGCgCg-UCG-UCGCGCGCgAGGu -3'
miRNA:   3'- -CCACGUG-GagGGCgAGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 100085 0.7 0.649996
Target:  5'- cGG-GCGCCUCgaCCGCcgacgaggacUCGCGCgggaugacguucgucACCAGGa -3'
miRNA:   3'- -CCaCGUGGAG--GGCG----------AGCGCG---------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 103377 0.69 0.684247
Target:  5'- cGGUGCgcgauACCUCCacggGCUCcuGCGCGCUGGu -3'
miRNA:   3'- -CCACG-----UGGAGGg---CGAG--CGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 103852 0.68 0.749138
Target:  5'- cGGUugGCcucgAUCUCCuCGCgcagcaggUCGCGUGCCAGGa -3'
miRNA:   3'- -CCA--CG----UGGAGG-GCG--------AGCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 108492 0.68 0.730934
Target:  5'- --aGCACUUccacuagcaCCCGCagGCGCACgCGGGa -3'
miRNA:   3'- ccaCGUGGA---------GGGCGagCGCGUG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 110019 0.7 0.607945
Target:  5'- uGUGCACCcggcUCUCGUgggCGCGCugCGGu -3'
miRNA:   3'- cCACGUGG----AGGGCGa--GCGCGugGUCc -5'
14378 5' -60.4 NC_003521.1 + 110891 0.68 0.75811
Target:  5'- -cUGCGCCgucucggCCagguGUUCGCGCAgCAGGc -3'
miRNA:   3'- ccACGUGGa------GGg---CGAGCGCGUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 110918 0.69 0.665258
Target:  5'- cGGUGCugUUCcgcacggugCCGUUgGUGCACUGGGu -3'
miRNA:   3'- -CCACGugGAG---------GGCGAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 111875 0.72 0.514229
Target:  5'- uGGUGCagacGCUgguggagaacgCCaCGCUgGCGCGCCAGGc -3'
miRNA:   3'- -CCACG----UGGa----------GG-GCGAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 111977 0.67 0.801359
Target:  5'- --cGCugUUCCUGCUCaacCGCACCAa- -3'
miRNA:   3'- ccaCGugGAGGGCGAGc--GCGUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.