miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 103377 0.69 0.684247
Target:  5'- cGGUGCgcgauACCUCCacggGCUCcuGCGCGCUGGu -3'
miRNA:   3'- -CCACG-----UGGAGGg---CGAG--CGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 162326 0.69 0.688029
Target:  5'- cGUGU-CCggucggCCCGUccgagguaagucacgUCGCGCGCCGGGc -3'
miRNA:   3'- cCACGuGGa-----GGGCG---------------AGCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 225878 0.69 0.689917
Target:  5'- cGGUGCuccaugcgcgucugGCgCUgCCGCUCGCGCucgaagcGCCGGu -3'
miRNA:   3'- -CCACG--------------UG-GAgGGCGAGCGCG-------UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 72596 0.69 0.693689
Target:  5'- --gGCGgCUCCCGCUaGCGCACUg-- -3'
miRNA:   3'- ccaCGUgGAGGGCGAgCGCGUGGucc -5'
14378 5' -60.4 NC_003521.1 + 165840 0.69 0.693689
Target:  5'- --cGCGCa-CCCGCUCGgGCGagcaCAGGa -3'
miRNA:   3'- ccaCGUGgaGGGCGAGCgCGUg---GUCC- -5'
14378 5' -60.4 NC_003521.1 + 20290 0.69 0.703086
Target:  5'- cGGUGgAUCUCgCCgGCgccaUGCaGCACCAGGa -3'
miRNA:   3'- -CCACgUGGAG-GG-CGa---GCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 20739 0.69 0.703086
Target:  5'- cGGUGCAUCagCUGCguguaCGCGCugCuGGu -3'
miRNA:   3'- -CCACGUGGagGGCGa----GCGCGugGuCC- -5'
14378 5' -60.4 NC_003521.1 + 207570 0.69 0.712431
Target:  5'- --cGCGCCggCCUGCUgGCGUguGCCAGc -3'
miRNA:   3'- ccaCGUGGa-GGGCGAgCGCG--UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 180524 0.69 0.716152
Target:  5'- gGGUGUcgucucaucgucaccACCgUCuCCGCg-GCGUACCGGGg -3'
miRNA:   3'- -CCACG---------------UGG-AG-GGCGagCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 48578 0.68 0.72079
Target:  5'- aGGUGCGCUguaagugcaaCCCGCUgucacucCGUGCACCGu- -3'
miRNA:   3'- -CCACGUGGa---------GGGCGA-------GCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 1864 0.68 0.721716
Target:  5'- gGGgcccgGCGCCUCUaauaccgcaGCUgGCGCagguACCGGGa -3'
miRNA:   3'- -CCa----CGUGGAGGg--------CGAgCGCG----UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 25174 0.68 0.721716
Target:  5'- --cGCugCUCCCGC-CGCG-ACCAugcGGa -3'
miRNA:   3'- ccaCGugGAGGGCGaGCGCgUGGU---CC- -5'
14378 5' -60.4 NC_003521.1 + 11556 0.68 0.721716
Target:  5'- ---aCGCCUCCgGCgccgUCGUGCGCCGGa -3'
miRNA:   3'- ccacGUGGAGGgCG----AGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 120141 0.68 0.721716
Target:  5'- aGGUGCggcucACCUCCaCGgaggUGCGCAgguCCAGGa -3'
miRNA:   3'- -CCACG-----UGGAGG-GCga--GCGCGU---GGUCC- -5'
14378 5' -60.4 NC_003521.1 + 202091 0.68 0.721716
Target:  5'- gGGgcccgGCGCCUCUaauaccgcaGCUgGCGCagguACCGGGa -3'
miRNA:   3'- -CCa----CGUGGAGGg--------CGAgCGCG----UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 180689 0.68 0.730015
Target:  5'- cGUGCucgacACCUCCuCGCucagcagUCGCGuCACCAGc -3'
miRNA:   3'- cCACG-----UGGAGG-GCG-------AGCGC-GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 108492 0.68 0.730934
Target:  5'- --aGCACUUccacuagcaCCCGCagGCGCACgCGGGa -3'
miRNA:   3'- ccaCGUGGA---------GGGCGagCGCGUG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 72572 0.68 0.730934
Target:  5'- --aGCGCCUCgUGCggcaaCGCGUuCCAGGc -3'
miRNA:   3'- ccaCGUGGAGgGCGa----GCGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 32145 0.68 0.738255
Target:  5'- cGGUGCACCaagcggcggaaggcgCCCGCguuguuccaucgaaaGUGCugCGGGu -3'
miRNA:   3'- -CCACGUGGa--------------GGGCGag-------------CGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 205176 0.68 0.740077
Target:  5'- --aGCucGCCUgCCGCUCGCaGCGCgugCGGGa -3'
miRNA:   3'- ccaCG--UGGAgGGCGAGCG-CGUG---GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.