miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 66348 0.67 0.801359
Target:  5'- --aGCaACUggaUCCCGCUCGCGUGgCCGGcGg -3'
miRNA:   3'- ccaCG-UGG---AGGGCGAGCGCGU-GGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 55736 0.67 0.801359
Target:  5'- --aGCGCCUCCCaGCgcgCGgGCGgCAGc -3'
miRNA:   3'- ccaCGUGGAGGG-CGa--GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 111977 0.67 0.801359
Target:  5'- --cGCugUUCCUGCUCaacCGCACCAa- -3'
miRNA:   3'- ccaCGugGAGGGCGAGc--GCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 126814 0.67 0.798011
Target:  5'- --cGCACCUCCagcaccuucgcgUGCUCGCccacgaacugcacCGCCAGGa -3'
miRNA:   3'- ccaCGUGGAGG------------GCGAGCGc------------GUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 14969 0.67 0.792948
Target:  5'- --cGCACCUgugCCCGCaccaccacgaGCGCGCCGuGGa -3'
miRNA:   3'- ccaCGUGGA---GGGCGag--------CGCGUGGU-CC- -5'
14378 5' -60.4 NC_003521.1 + 132811 0.67 0.792948
Target:  5'- -uUGCGCCgagCCCGCUaCGUGUACUc-- -3'
miRNA:   3'- ccACGUGGa--GGGCGA-GCGCGUGGucc -5'
14378 5' -60.4 NC_003521.1 + 204851 0.67 0.792948
Target:  5'- aGGUGUAguCCaCCCGgauCUCGgGCACgCAGGu -3'
miRNA:   3'- -CCACGU--GGaGGGC---GAGCgCGUG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 135342 0.67 0.792948
Target:  5'- gGGuUGCcucCCUCCCGC--GCGCGCCGu- -3'
miRNA:   3'- -CC-ACGu--GGAGGGCGagCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 156601 0.67 0.792948
Target:  5'- uGGUGCagcgcgGCCUCUCGCgccuggugcugCGCGaCGCCcuGGGc -3'
miRNA:   3'- -CCACG------UGGAGGGCGa----------GCGC-GUGG--UCC- -5'
14378 5' -60.4 NC_003521.1 + 87698 0.67 0.7921
Target:  5'- uGGUGgACCaaagccgCCUGCUgccgucgCGCGCGCCcGGc -3'
miRNA:   3'- -CCACgUGGa------GGGCGA-------GCGCGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 144298 0.67 0.784411
Target:  5'- --cGCugCUgCCGCaCGCGCugCGGu -3'
miRNA:   3'- ccaCGugGAgGGCGaGCGCGugGUCc -5'
14378 5' -60.4 NC_003521.1 + 139452 0.67 0.784411
Target:  5'- --gGCGCga-CgGCUCGCGCACCcGGGa -3'
miRNA:   3'- ccaCGUGgagGgCGAGCGCGUGG-UCC- -5'
14378 5' -60.4 NC_003521.1 + 11836 0.67 0.784411
Target:  5'- cGUGCugCcggUCCUGCgccgccCGCGCACCuccucGGa -3'
miRNA:   3'- cCACGugG---AGGGCGa-----GCGCGUGGu----CC- -5'
14378 5' -60.4 NC_003521.1 + 130554 0.67 0.775753
Target:  5'- --aGCGCCUUCgUGCUCaGCcgcuucaaGCGCCAGGu -3'
miRNA:   3'- ccaCGUGGAGG-GCGAG-CG--------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 81169 0.67 0.775753
Target:  5'- gGGUGCGCCg-UUGgUCcaCGCACCAGGc -3'
miRNA:   3'- -CCACGUGGagGGCgAGc-GCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 194297 0.67 0.775753
Target:  5'- uGGUGCGCCUggagaagaCGCcCGUGUGCCAGc -3'
miRNA:   3'- -CCACGUGGAgg------GCGaGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 171204 0.68 0.766984
Target:  5'- uGGUGCACUgCUCGCUCuGCGgcaguCAgCGGGu -3'
miRNA:   3'- -CCACGUGGaGGGCGAG-CGC-----GUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 43341 0.68 0.766984
Target:  5'- --cGCGCCguccggCCCGC-CGCGCgugaacauccGCCAGa -3'
miRNA:   3'- ccaCGUGGa-----GGGCGaGCGCG----------UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 150759 0.68 0.766984
Target:  5'- --cGCGCCcgCCCGCgugugcgcUCGCGCGacgaCGGGc -3'
miRNA:   3'- ccaCGUGGa-GGGCG--------AGCGCGUg---GUCC- -5'
14378 5' -60.4 NC_003521.1 + 46528 0.68 0.766984
Target:  5'- cGG-GCGuCUUCUC-CagGCGCACCAGGg -3'
miRNA:   3'- -CCaCGU-GGAGGGcGagCGCGUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.