miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 226341 0.66 0.825764
Target:  5'- uGGUGCGCgCgcCCCGCggguaGCGC-CgCGGGa -3'
miRNA:   3'- -CCACGUG-Ga-GGGCGag---CGCGuG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 24666 0.66 0.825764
Target:  5'- uGGUGguCACCUUCCug-UGCGC-CCAGGu -3'
miRNA:   3'- -CCAC--GUGGAGGGcgaGCGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 33586 0.66 0.825764
Target:  5'- cGGUagAUCUUCUGgUCGCGCACCAc- -3'
miRNA:   3'- -CCAcgUGGAGGGCgAGCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 204223 0.66 0.825764
Target:  5'- cGUGCgagucgucgGCCaCCCGCcgccaggccaguUCGCGCAUgGGGa -3'
miRNA:   3'- cCACG---------UGGaGGGCG------------AGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 24707 0.66 0.825764
Target:  5'- --cGCgGCCUCCgCGC-CGCGCucaACCAGu -3'
miRNA:   3'- ccaCG-UGGAGG-GCGaGCGCG---UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 169001 0.66 0.825764
Target:  5'- cGGcUGCGCCgucUCCCuCUguuguuuugugCGCGCGCCGGu -3'
miRNA:   3'- -CC-ACGUGG---AGGGcGA-----------GCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 117082 0.66 0.825764
Target:  5'- cGGccgGC-CUUCUCGCUguucccCGCGCGuCCGGGa -3'
miRNA:   3'- -CCa--CGuGGAGGGCGA------GCGCGU-GGUCC- -5'
14378 5' -60.4 NC_003521.1 + 165778 0.66 0.825764
Target:  5'- cGUGCcgaagGCCagCCCGCUgGCGCugCcgucgcaguAGGg -3'
miRNA:   3'- cCACG-----UGGa-GGGCGAgCGCGugG---------UCC- -5'
14378 5' -60.4 NC_003521.1 + 85425 0.67 0.817774
Target:  5'- cGGUGCccaGCCcCCCGCcggccucgUCGUccGCGCCGGc -3'
miRNA:   3'- -CCACG---UGGaGGGCG--------AGCG--CGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 148771 0.67 0.817774
Target:  5'- gGGUGC-CCUCggCGgUCGCGC-CgAGGa -3'
miRNA:   3'- -CCACGuGGAGg-GCgAGCGCGuGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 224078 0.67 0.817774
Target:  5'- --cGU-CCUCCgGCgggcgCGCGCGCCGGcGg -3'
miRNA:   3'- ccaCGuGGAGGgCGa----GCGCGUGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 86177 0.67 0.817774
Target:  5'- cGGUGCGCa-CCagCGaCUCGCGgGCCAcGGu -3'
miRNA:   3'- -CCACGUGgaGG--GC-GAGCGCgUGGU-CC- -5'
14378 5' -60.4 NC_003521.1 + 238109 0.67 0.817774
Target:  5'- cGGUGacgGCgCUCCCGCacgagUgGCGUuCCGGGg -3'
miRNA:   3'- -CCACg--UG-GAGGGCG-----AgCGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 151347 0.67 0.809637
Target:  5'- -cUGCuCUUCCCGCUCuGCGgACCGc- -3'
miRNA:   3'- ccACGuGGAGGGCGAG-CGCgUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 162628 0.67 0.809637
Target:  5'- --aGCGCCgcgCCCGCUC-CGCACg--- -3'
miRNA:   3'- ccaCGUGGa--GGGCGAGcGCGUGgucc -5'
14378 5' -60.4 NC_003521.1 + 197022 0.67 0.801359
Target:  5'- aGUGCACCUCCU-CUCGUuaGCGagaAGGg -3'
miRNA:   3'- cCACGUGGAGGGcGAGCG--CGUgg-UCC- -5'
14378 5' -60.4 NC_003521.1 + 162913 0.67 0.801359
Target:  5'- gGGUGacggggACCUcaaggagaaCCUGUUCGUGCGCgGGGg -3'
miRNA:   3'- -CCACg-----UGGA---------GGGCGAGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 66348 0.67 0.801359
Target:  5'- --aGCaACUggaUCCCGCUCGCGUGgCCGGcGg -3'
miRNA:   3'- ccaCG-UGG---AGGGCGAGCGCGU-GGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 55736 0.67 0.801359
Target:  5'- --aGCGCCUCCCaGCgcgCGgGCGgCAGc -3'
miRNA:   3'- ccaCGUGGAGGG-CGa--GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 111977 0.67 0.801359
Target:  5'- --cGCugUUCCUGCUCaacCGCACCAa- -3'
miRNA:   3'- ccaCGugGAGGGCGAGc--GCGUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.