Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14378 | 5' | -60.4 | NC_003521.1 | + | 212237 | 0.66 | 0.848786 |
Target: 5'- cGGUGCGCagcagCCCGCcgucCGCGUagucggugGCCGGcGg -3' miRNA: 3'- -CCACGUGga---GGGCGa---GCGCG--------UGGUC-C- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 225506 | 0.66 | 0.848786 |
Target: 5'- --cGCGCUgaucaCCCGCUCG-GCGCCGu- -3' miRNA: 3'- ccaCGUGGa----GGGCGAGCgCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 148606 | 0.66 | 0.848786 |
Target: 5'- cGG-GC-CCUCacagCGCUCGuCGCgcgGCCGGGc -3' miRNA: 3'- -CCaCGuGGAGg---GCGAGC-GCG---UGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 175573 | 0.66 | 0.848786 |
Target: 5'- --aGCAguuCCUCuuGCgCGCGCGgauCCAGGc -3' miRNA: 3'- ccaCGU---GGAGggCGaGCGCGU---GGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 214780 | 0.66 | 0.841276 |
Target: 5'- -----cCCUCCCGCUCGC-CGCCGu- -3' miRNA: 3'- ccacguGGAGGGCGAGCGcGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 45121 | 0.66 | 0.841276 |
Target: 5'- --gGCGCCguaUGUUCGUGCACCGGc -3' miRNA: 3'- ccaCGUGGaggGCGAGCGCGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 121955 | 0.66 | 0.841276 |
Target: 5'- -cUGCACCUCCuCGCcCGUGUgaUAGGu -3' miRNA: 3'- ccACGUGGAGG-GCGaGCGCGugGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 92486 | 0.66 | 0.841276 |
Target: 5'- uGGUGCugACCUUCgugaaCGUgagCGUGCACCuGGu -3' miRNA: 3'- -CCACG--UGGAGG-----GCGa--GCGCGUGGuCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 128702 | 0.66 | 0.841276 |
Target: 5'- --cGCGCagauaCCGCUUGCGCACCcGa -3' miRNA: 3'- ccaCGUGgag--GGCGAGCGCGUGGuCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 166675 | 0.66 | 0.841276 |
Target: 5'- --gGCACCUgggcCCCGUg-GCGCGCCAc- -3' miRNA: 3'- ccaCGUGGA----GGGCGagCGCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 53665 | 0.66 | 0.841276 |
Target: 5'- --cGUugCUUCCGCUCcugcCGCcGCCGGGc -3' miRNA: 3'- ccaCGugGAGGGCGAGc---GCG-UGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 162226 | 0.66 | 0.8336 |
Target: 5'- cGGUGCcucuccGCUUCCCGCgaCGCuCACCGc- -3' miRNA: 3'- -CCACG------UGGAGGGCGa-GCGcGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 99249 | 0.66 | 0.8336 |
Target: 5'- cGGUGCGCgCg-UCG-UCGCGCGCgAGGu -3' miRNA: 3'- -CCACGUG-GagGGCgAGCGCGUGgUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 127840 | 0.66 | 0.8336 |
Target: 5'- aGGgccccgGCGCCagCCCGUcgggcaggUUGCcCACCAGGa -3' miRNA: 3'- -CCa-----CGUGGa-GGGCG--------AGCGcGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 87319 | 0.66 | 0.8336 |
Target: 5'- gGGUGCGg-UCCaCGCUgGCGCugACCAGa -3' miRNA: 3'- -CCACGUggAGG-GCGAgCGCG--UGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 94677 | 0.66 | 0.8336 |
Target: 5'- --cGCucuCCUCgCGCUCGCGgaaaauggccgaCACCAGa -3' miRNA: 3'- ccaCGu--GGAGgGCGAGCGC------------GUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 206444 | 0.66 | 0.8336 |
Target: 5'- --aGCGCCaccaCCUGCUggUGCGCAacgcCCAGGa -3' miRNA: 3'- ccaCGUGGa---GGGCGA--GCGCGU----GGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 48576 | 0.66 | 0.8336 |
Target: 5'- aGGUGaCGgcuaacggccacCCUCCCGCg---GCGCCGGGu -3' miRNA: 3'- -CCAC-GU------------GGAGGGCGagcgCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 226341 | 0.66 | 0.825764 |
Target: 5'- uGGUGCGCgCgcCCCGCggguaGCGC-CgCGGGa -3' miRNA: 3'- -CCACGUG-Ga-GGGCGag---CGCGuG-GUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 165778 | 0.66 | 0.825764 |
Target: 5'- cGUGCcgaagGCCagCCCGCUgGCGCugCcgucgcaguAGGg -3' miRNA: 3'- cCACG-----UGGa-GGGCGAgCGCGugG---------UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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