Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14378 | 5' | -60.4 | NC_003521.1 | + | 240440 | 0.66 | 0.856125 |
Target: 5'- aGUGUugUUCCCGCgugaggCGgGCAgCGGu -3' miRNA: 3'- cCACGugGAGGGCGa-----GCgCGUgGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 92486 | 0.66 | 0.841276 |
Target: 5'- uGGUGCugACCUUCgugaaCGUgagCGUGCACCuGGu -3' miRNA: 3'- -CCACG--UGGAGG-----GCGa--GCGCGUGGuCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 145986 | 0.66 | 0.862578 |
Target: 5'- uGGcGCGCUUCCCGCUgcCGgcuuuugucaaucCGCGCCAc- -3' miRNA: 3'- -CCaCGUGGAGGGCGA--GC-------------GCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 225506 | 0.66 | 0.848786 |
Target: 5'- --cGCGCUgaucaCCCGCUCG-GCGCCGu- -3' miRNA: 3'- ccaCGUGGa----GGGCGAGCgCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 172937 | 0.66 | 0.848786 |
Target: 5'- gGGUGCACCUCCa--UC-UGCACCugcugacgguguAGGa -3' miRNA: 3'- -CCACGUGGAGGgcgAGcGCGUGG------------UCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 233086 | 0.66 | 0.863286 |
Target: 5'- --cGcCGCCUCcgCCGCUCGCGcCGCCc-- -3' miRNA: 3'- ccaC-GUGGAG--GGCGAGCGC-GUGGucc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 214780 | 0.66 | 0.841276 |
Target: 5'- -----cCCUCCCGCUCGC-CGCCGu- -3' miRNA: 3'- ccacguGGAGGGCGAGCGcGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 180366 | 0.66 | 0.863286 |
Target: 5'- cGGUGCugCUCgUGUUgGUgGUACUGGGc -3' miRNA: 3'- -CCACGugGAGgGCGAgCG-CGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 217521 | 0.66 | 0.856125 |
Target: 5'- cGGUGCugUagaCCCGCgUGCagACCAGGa -3' miRNA: 3'- -CCACGugGa--GGGCGaGCGcgUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 121352 | 0.66 | 0.856125 |
Target: 5'- cGUGCGCCgucuugCCCgGCUUGaUG-ACCAGGc -3' miRNA: 3'- cCACGUGGa-----GGG-CGAGC-GCgUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 23287 | 0.66 | 0.848786 |
Target: 5'- cGUGCACCgcuUCCUGgUC-UGCACgCGGGu -3' miRNA: 3'- cCACGUGG---AGGGCgAGcGCGUG-GUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 45121 | 0.66 | 0.841276 |
Target: 5'- --gGCGCCguaUGUUCGUGCACCGGc -3' miRNA: 3'- ccaCGUGGaggGCGAGCGCGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 114257 | 0.66 | 0.863286 |
Target: 5'- --gGCgGCUUCCCGCugcccacggccuUCGCGCACgAGu -3' miRNA: 3'- ccaCG-UGGAGGGCG------------AGCGCGUGgUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 137294 | 0.66 | 0.848786 |
Target: 5'- --cGCacGCCUCCaugagcgaGUUCGCGCGCCugcugcuGGg -3' miRNA: 3'- ccaCG--UGGAGGg-------CGAGCGCGUGGu------CC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 166675 | 0.66 | 0.841276 |
Target: 5'- --gGCACCUgggcCCCGUg-GCGCGCCAc- -3' miRNA: 3'- ccaCGUGGA----GGGCGagCGCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 24707 | 0.66 | 0.825764 |
Target: 5'- --cGCgGCCUCCgCGC-CGCGCucaACCAGu -3' miRNA: 3'- ccaCG-UGGAGG-GCGaGCGCG---UGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 169001 | 0.66 | 0.825764 |
Target: 5'- cGGcUGCGCCgucUCCCuCUguuguuuugugCGCGCGCCGGu -3' miRNA: 3'- -CC-ACGUGG---AGGGcGA-----------GCGCGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 54317 | 0.66 | 0.863286 |
Target: 5'- --aGCGCgUCgUGCUC-CGuCACCAGGc -3' miRNA: 3'- ccaCGUGgAGgGCGAGcGC-GUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 117082 | 0.66 | 0.825764 |
Target: 5'- cGGccgGC-CUUCUCGCUguucccCGCGCGuCCGGGa -3' miRNA: 3'- -CCa--CGuGGAGGGCGA------GCGCGU-GGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 94677 | 0.66 | 0.8336 |
Target: 5'- --cGCucuCCUCgCGCUCGCGgaaaauggccgaCACCAGa -3' miRNA: 3'- ccaCGu--GGAGgGCGAGCGC------------GUGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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