miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 48576 0.66 0.8336
Target:  5'- aGGUGaCGgcuaacggccacCCUCCCGCg---GCGCCGGGu -3'
miRNA:   3'- -CCAC-GU------------GGAGGGCGagcgCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 206444 0.66 0.8336
Target:  5'- --aGCGCCaccaCCUGCUggUGCGCAacgcCCAGGa -3'
miRNA:   3'- ccaCGUGGa---GGGCGA--GCGCGU----GGUCC- -5'
14378 5' -60.4 NC_003521.1 + 121352 0.66 0.856125
Target:  5'- cGUGCGCCgucuugCCCgGCUUGaUG-ACCAGGc -3'
miRNA:   3'- cCACGUGGa-----GGG-CGAGC-GCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 217521 0.66 0.856125
Target:  5'- cGGUGCugUagaCCCGCgUGCagACCAGGa -3'
miRNA:   3'- -CCACGugGa--GGGCGaGCGcgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 180366 0.66 0.863286
Target:  5'- cGGUGCugCUCgUGUUgGUgGUACUGGGc -3'
miRNA:   3'- -CCACGugGAGgGCGAgCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 214780 0.66 0.841276
Target:  5'- -----cCCUCCCGCUCGC-CGCCGu- -3'
miRNA:   3'- ccacguGGAGGGCGAGCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 233086 0.66 0.863286
Target:  5'- --cGcCGCCUCcgCCGCUCGCGcCGCCc-- -3'
miRNA:   3'- ccaC-GUGGAG--GGCGAGCGC-GUGGucc -5'
14378 5' -60.4 NC_003521.1 + 172937 0.66 0.848786
Target:  5'- gGGUGCACCUCCa--UC-UGCACCugcugacgguguAGGa -3'
miRNA:   3'- -CCACGUGGAGGgcgAGcGCGUGG------------UCC- -5'
14378 5' -60.4 NC_003521.1 + 148606 0.66 0.848786
Target:  5'- cGG-GC-CCUCacagCGCUCGuCGCgcgGCCGGGc -3'
miRNA:   3'- -CCaCGuGGAGg---GCGAGC-GCG---UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 145986 0.66 0.862578
Target:  5'- uGGcGCGCUUCCCGCUgcCGgcuuuugucaaucCGCGCCAc- -3'
miRNA:   3'- -CCaCGUGGAGGGCGA--GC-------------GCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 128702 0.66 0.841276
Target:  5'- --cGCGCagauaCCGCUUGCGCACCcGa -3'
miRNA:   3'- ccaCGUGgag--GGCGAGCGCGUGGuCc -5'
14378 5' -60.4 NC_003521.1 + 92486 0.66 0.841276
Target:  5'- uGGUGCugACCUUCgugaaCGUgagCGUGCACCuGGu -3'
miRNA:   3'- -CCACG--UGGAGG-----GCGa--GCGCGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 94677 0.66 0.8336
Target:  5'- --cGCucuCCUCgCGCUCGCGgaaaauggccgaCACCAGa -3'
miRNA:   3'- ccaCGu--GGAGgGCGAGCGC------------GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 117082 0.66 0.825764
Target:  5'- cGGccgGC-CUUCUCGCUguucccCGCGCGuCCGGGa -3'
miRNA:   3'- -CCa--CGuGGAGGGCGA------GCGCGU-GGUCC- -5'
14378 5' -60.4 NC_003521.1 + 54317 0.66 0.863286
Target:  5'- --aGCGCgUCgUGCUC-CGuCACCAGGc -3'
miRNA:   3'- ccaCGUGgAGgGCGAGcGC-GUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 169001 0.66 0.825764
Target:  5'- cGGcUGCGCCgucUCCCuCUguuguuuugugCGCGCGCCGGu -3'
miRNA:   3'- -CC-ACGUGG---AGGGcGA-----------GCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 24707 0.66 0.825764
Target:  5'- --cGCgGCCUCCgCGC-CGCGCucaACCAGu -3'
miRNA:   3'- ccaCG-UGGAGG-GCGaGCGCG---UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 99249 0.66 0.8336
Target:  5'- cGGUGCGCgCg-UCG-UCGCGCGCgAGGu -3'
miRNA:   3'- -CCACGUG-GagGGCgAGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 137294 0.66 0.848786
Target:  5'- --cGCacGCCUCCaugagcgaGUUCGCGCGCCugcugcuGGg -3'
miRNA:   3'- ccaCG--UGGAGGg-------CGAGCGCGUGGu------CC- -5'
14378 5' -60.4 NC_003521.1 + 114257 0.66 0.863286
Target:  5'- --gGCgGCUUCCCGCugcccacggccuUCGCGCACgAGu -3'
miRNA:   3'- ccaCG-UGGAGGGCG------------AGCGCGUGgUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.