miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 184180 0.72 0.514229
Target:  5'- aGGUGCACCggCCCGUggugcgcuucuUCGUGgACCucuGGg -3'
miRNA:   3'- -CCACGUGGa-GGGCG-----------AGCGCgUGGu--CC- -5'
14378 5' -60.4 NC_003521.1 + 225771 0.72 0.495235
Target:  5'- --cGCGCCgcUCgCGCUCGCGCcgcucgucaggguGCCAGGc -3'
miRNA:   3'- ccaCGUGG--AGgGCGAGCGCG-------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 195605 0.72 0.498829
Target:  5'- aGGUGCGCagccggCCCGCcagcuggUCGCGUugcugcagcuccgagGCCAGGg -3'
miRNA:   3'- -CCACGUGga----GGGCG-------AGCGCG---------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 172645 0.72 0.53259
Target:  5'- --cGCGCC-CCCGUUggucUGCGCGCUGGGg -3'
miRNA:   3'- ccaCGUGGaGGGCGA----GCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 74609 0.72 0.541858
Target:  5'- cGGcGCGCCUCgCCGC-CGCGCcaacAgCGGGg -3'
miRNA:   3'- -CCaCGUGGAG-GGCGaGCGCG----UgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 137623 0.71 0.56055
Target:  5'- --gGaCGCCUaCCGCUCGCGCAUCGcGGu -3'
miRNA:   3'- ccaC-GUGGAgGGCGAGCGCGUGGU-CC- -5'
14378 5' -60.4 NC_003521.1 + 204187 0.71 0.56902
Target:  5'- cGUGCGCCUUCCaguccauGCagGCGCACCAc- -3'
miRNA:   3'- cCACGUGGAGGG-------CGagCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 85638 0.71 0.569963
Target:  5'- cGUGCACCUCCCccccggcaGC-CGCGgcCGCCAGc -3'
miRNA:   3'- cCACGUGGAGGG--------CGaGCGC--GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 153506 0.71 0.588899
Target:  5'- -cUGCGCCUCCaggCGCUCgcuGCGCACCu-- -3'
miRNA:   3'- ccACGUGGAGG---GCGAG---CGCGUGGucc -5'
14378 5' -60.4 NC_003521.1 + 152774 0.71 0.588899
Target:  5'- cGGcGuCGCCUCCUGCgccUUGCGCACCGc- -3'
miRNA:   3'- -CCaC-GUGGAGGGCG---AGCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 148823 0.71 0.579415
Target:  5'- --cGCGCCUCgccgcucccgcuCCGUUCGCGCcggaucggccGCCGGGu -3'
miRNA:   3'- ccaCGUGGAG------------GGCGAGCGCG----------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 88827 0.71 0.569963
Target:  5'- -aUGCACUUCUCGCU-GUGCACCAu- -3'
miRNA:   3'- ccACGUGGAGGGCGAgCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 208693 0.71 0.580362
Target:  5'- uGGUGCACCgcgCCCGCUaccugcccgagaucaGCcGCGCCGc- -3'
miRNA:   3'- -CCACGUGGa--GGGCGAg--------------CG-CGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 14481 0.71 0.598411
Target:  5'- --gGCGCUaCCCGCggggcgCGCGCACCAu- -3'
miRNA:   3'- ccaCGUGGaGGGCGa-----GCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 227950 0.7 0.605083
Target:  5'- uGGUGUACCUgcgggaaggCCCguaccgcugcgucuGCUCGCGCACguGa -3'
miRNA:   3'- -CCACGUGGA---------GGG--------------CGAGCGCGUGguCc -5'
14378 5' -60.4 NC_003521.1 + 202616 0.7 0.636616
Target:  5'- -cUGCGCCUCCUGCccgaccUCGaccgcgaGCACUGGGa -3'
miRNA:   3'- ccACGUGGAGGGCG------AGCg------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 144180 0.7 0.646175
Target:  5'- --gGCGCCgCCUGC-CGCGCGCUGGa -3'
miRNA:   3'- ccaCGUGGaGGGCGaGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 85250 0.7 0.646175
Target:  5'- cGGcGCGCaaauaacuggCUaCCCGCUcCGCGCGCCGGc -3'
miRNA:   3'- -CCaCGUG----------GA-GGGCGA-GCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 129980 0.7 0.655725
Target:  5'- cGUGCACCgUCgCUGC-CGCuGCGCCGGcGg -3'
miRNA:   3'- cCACGUGG-AG-GGCGaGCG-CGUGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 59651 0.7 0.636616
Target:  5'- uGGUGCGgCagaCGCUgGCGCGCCuGGa -3'
miRNA:   3'- -CCACGUgGaggGCGAgCGCGUGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.