Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14378 | 5' | -60.4 | NC_003521.1 | + | 164935 | 0.7 | 0.617494 |
Target: 5'- cGG-GCcCCUCCUccggcgGCUCGCGuCGCCGGa -3' miRNA: 3'- -CCaCGuGGAGGG------CGAGCGC-GUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 56659 | 1.11 | 0.001484 |
Target: 5'- cGGUGCACCUCCCGCUCGCGCACCAGGu -3' miRNA: 3'- -CCACGUGGAGGGCGAGCGCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 53367 | 0.75 | 0.378951 |
Target: 5'- --aGCACCgUCCCGCUgacgcgGCGCACCAGc -3' miRNA: 3'- ccaCGUGG-AGGGCGAg-----CGCGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 129774 | 0.74 | 0.426929 |
Target: 5'- --cGCGCCugUCCCGCgcacgUGCGCGCCgAGGc -3' miRNA: 3'- ccaCGUGG--AGGGCGa----GCGCGUGG-UCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 34434 | 0.74 | 0.43527 |
Target: 5'- cGGUGCGaCUCCaCGUagGCGCugCGGGc -3' miRNA: 3'- -CCACGUgGAGG-GCGagCGCGugGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 92054 | 0.73 | 0.443705 |
Target: 5'- cGGgGUGCCUCCCGUagcgaUgGCGgACCGGGg -3' miRNA: 3'- -CCaCGUGGAGGGCG-----AgCGCgUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 225771 | 0.72 | 0.495235 |
Target: 5'- --cGCGCCgcUCgCGCUCGCGCcgcucgucaggguGCCAGGc -3' miRNA: 3'- ccaCGUGG--AGgGCGAGCGCG-------------UGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 195605 | 0.72 | 0.498829 |
Target: 5'- aGGUGCGCagccggCCCGCcagcuggUCGCGUugcugcagcuccgagGCCAGGg -3' miRNA: 3'- -CCACGUGga----GGGCG-------AGCGCG---------------UGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 172645 | 0.72 | 0.53259 |
Target: 5'- --cGCGCC-CCCGUUggucUGCGCGCUGGGg -3' miRNA: 3'- ccaCGUGGaGGGCGA----GCGCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 74609 | 0.72 | 0.541858 |
Target: 5'- cGGcGCGCCUCgCCGC-CGCGCcaacAgCGGGg -3' miRNA: 3'- -CCaCGUGGAG-GGCGaGCGCG----UgGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 137623 | 0.71 | 0.56055 |
Target: 5'- --gGaCGCCUaCCGCUCGCGCAUCGcGGu -3' miRNA: 3'- ccaC-GUGGAgGGCGAGCGCGUGGU-CC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 204187 | 0.71 | 0.56902 |
Target: 5'- cGUGCGCCUUCCaguccauGCagGCGCACCAc- -3' miRNA: 3'- cCACGUGGAGGG-------CGagCGCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 85638 | 0.71 | 0.569963 |
Target: 5'- cGUGCACCUCCCccccggcaGC-CGCGgcCGCCAGc -3' miRNA: 3'- cCACGUGGAGGG--------CGaGCGC--GUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 153506 | 0.71 | 0.588899 |
Target: 5'- -cUGCGCCUCCaggCGCUCgcuGCGCACCu-- -3' miRNA: 3'- ccACGUGGAGG---GCGAG---CGCGUGGucc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 152774 | 0.71 | 0.588899 |
Target: 5'- cGGcGuCGCCUCCUGCgccUUGCGCACCGc- -3' miRNA: 3'- -CCaC-GUGGAGGGCG---AGCGCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 227950 | 0.7 | 0.605083 |
Target: 5'- uGGUGUACCUgcgggaaggCCCguaccgcugcgucuGCUCGCGCACguGa -3' miRNA: 3'- -CCACGUGGA---------GGG--------------CGAGCGCGUGguCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 110019 | 0.7 | 0.607945 |
Target: 5'- uGUGCACCcggcUCUCGUgggCGCGCugCGGu -3' miRNA: 3'- cCACGUGG----AGGGCGa--GCGCGugGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 113034 | 0.7 | 0.617494 |
Target: 5'- uGGUGCGCCUCUuucacaaacgCGC-CGUGCuCCAGc -3' miRNA: 3'- -CCACGUGGAGG----------GCGaGCGCGuGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 18900 | 0.7 | 0.617494 |
Target: 5'- cGUGCAUCUUCCcCUCGCaCGCCuGGc -3' miRNA: 3'- cCACGUGGAGGGcGAGCGcGUGGuCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 226819 | 0.7 | 0.625141 |
Target: 5'- cGGUacaGCGCCaugggguccucgCCCGC-CGcCGCGCCGGGc -3' miRNA: 3'- -CCA---CGUGGa-----------GGGCGaGC-GCGUGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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