miRNA display CGI


Results 21 - 40 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 24586 0.78 0.248881
Target:  5'- cGUcCACCUCCCGCUCGUaggccucgucugcguGUGCCAGGa -3'
miRNA:   3'- cCAcGUGGAGGGCGAGCG---------------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 20739 0.69 0.703086
Target:  5'- cGGUGCAUCagCUGCguguaCGCGCugCuGGu -3'
miRNA:   3'- -CCACGUGGagGGCGa----GCGCGugGuCC- -5'
14378 5' -60.4 NC_003521.1 + 128996 0.69 0.684247
Target:  5'- uGG-GCACCacgcuccagaUCUCGCUgGCGCcGCCAGa -3'
miRNA:   3'- -CCaCGUGG----------AGGGCGAgCGCG-UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 44047 0.7 0.617494
Target:  5'- cGUuUACCgcgCCCGCggUCGCGCcgGCCGGGg -3'
miRNA:   3'- cCAcGUGGa--GGGCG--AGCGCG--UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 197687 0.72 0.536291
Target:  5'- cGUGCACCUCCacgcccagcgccgagCGCUCGCcgcaGCGCUuGGu -3'
miRNA:   3'- cCACGUGGAGG---------------GCGAGCG----CGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 180689 0.68 0.730015
Target:  5'- cGUGCucgacACCUCCuCGCucagcagUCGCGuCACCAGc -3'
miRNA:   3'- cCACG-----UGGAGG-GCG-------AGCGC-GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 207570 0.69 0.712431
Target:  5'- --cGCGCCggCCUGCUgGCGUguGCCAGc -3'
miRNA:   3'- ccaCGUGGa-GGGCGAgCGCG--UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 184180 0.72 0.514229
Target:  5'- aGGUGCACCggCCCGUggugcgcuucuUCGUGgACCucuGGg -3'
miRNA:   3'- -CCACGUGGa-GGGCG-----------AGCGCgUGGu--CC- -5'
14378 5' -60.4 NC_003521.1 + 218361 0.7 0.646175
Target:  5'- --aGCGCCaCCCGCUCGCcaaGCgACgCAGGu -3'
miRNA:   3'- ccaCGUGGaGGGCGAGCG---CG-UG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 16387 0.7 0.636616
Target:  5'- --cGCACCUggaCCGCUCGCcCACCAc- -3'
miRNA:   3'- ccaCGUGGAg--GGCGAGCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 164574 0.74 0.392175
Target:  5'- cGUGCGCCUCUCGCgccUCacgcucgaggacguGCGCGCCcAGGg -3'
miRNA:   3'- cCACGUGGAGGGCG---AG--------------CGCGUGG-UCC- -5'
14378 5' -60.4 NC_003521.1 + 99012 0.75 0.386693
Target:  5'- uGGUGCugUUgCCGCUCGaGguCCAGGc -3'
miRNA:   3'- -CCACGugGAgGGCGAGCgCguGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 205176 0.68 0.740077
Target:  5'- --aGCucGCCUgCCGCUCGCaGCGCgugCGGGa -3'
miRNA:   3'- ccaCG--UGGAgGGCGAGCG-CGUG---GUCC- -5'
14378 5' -60.4 NC_003521.1 + 72572 0.68 0.730934
Target:  5'- --aGCGCCUCgUGCggcaaCGCGUuCCAGGc -3'
miRNA:   3'- ccaCGUGGAGgGCGa----GCGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 103377 0.69 0.684247
Target:  5'- cGGUGCgcgauACCUCCacggGCUCcuGCGCGCUGGu -3'
miRNA:   3'- -CCACG-----UGGAGGg---CGAG--CGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 88827 0.71 0.569963
Target:  5'- -aUGCACUUCUCGCU-GUGCACCAu- -3'
miRNA:   3'- ccACGUGGAGGGCGAgCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 222547 0.72 0.541858
Target:  5'- cGGUGCGgcCCUCCCG-UCGCGgG-CAGGu -3'
miRNA:   3'- -CCACGU--GGAGGGCgAGCGCgUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 173861 0.75 0.349039
Target:  5'- aGGcUGCGCUcgUCCUGC-CGCaGCGCCAGGu -3'
miRNA:   3'- -CC-ACGUGG--AGGGCGaGCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 2389 0.7 0.636616
Target:  5'- -cUGCGCCUCCUGCccgaccUCGaccgcgaGCACUGGGa -3'
miRNA:   3'- ccACGUGGAGGGCG------AGCg------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 100085 0.7 0.649996
Target:  5'- cGG-GCGCCUCgaCCGCcgacgaggacUCGCGCgggaugacguucgucACCAGGa -3'
miRNA:   3'- -CCaCGUGGAG--GGCG----------AGCGCG---------------UGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.