Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14378 | 5' | -60.4 | NC_003521.1 | + | 16387 | 0.7 | 0.636616 |
Target: 5'- --cGCACCUggaCCGCUCGCcCACCAc- -3' miRNA: 3'- ccaCGUGGAg--GGCGAGCGcGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 211739 | 0.7 | 0.617494 |
Target: 5'- aGUGCGCCaCCaugaGCUCGaUGCccACCAGGa -3' miRNA: 3'- cCACGUGGaGGg---CGAGC-GCG--UGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 128864 | 0.72 | 0.514229 |
Target: 5'- uGUGCGCaacagacucaUCCUGC-CGcCGCGCCAGGu -3' miRNA: 3'- cCACGUGg---------AGGGCGaGC-GCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 69414 | 0.76 | 0.320848 |
Target: 5'- cGUGaGCCUCCUGCUgGUGgACCGGGa -3' miRNA: 3'- cCACgUGGAGGGCGAgCGCgUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 1864 | 0.68 | 0.721716 |
Target: 5'- gGGgcccgGCGCCUCUaauaccgcaGCUgGCGCagguACCGGGa -3' miRNA: 3'- -CCa----CGUGGAGGg--------CGAgCGCG----UGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 18721 | 0.69 | 0.674768 |
Target: 5'- --aGCGCCUCgagaCGCUgccgGCGCugCAGGg -3' miRNA: 3'- ccaCGUGGAGg---GCGAg---CGCGugGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 208693 | 0.71 | 0.580362 |
Target: 5'- uGGUGCACCgcgCCCGCUaccugcccgagaucaGCcGCGCCGc- -3' miRNA: 3'- -CCACGUGGa--GGGCGAg--------------CG-CGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 174257 | 0.76 | 0.307404 |
Target: 5'- --cGCACgUUgCGCUgGCGCGCCAGGu -3' miRNA: 3'- ccaCGUGgAGgGCGAgCGCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 74942 | 0.7 | 0.655725 |
Target: 5'- uGGUGUACCcgccgCCCGagcaCGUGCACCGcuGGa -3' miRNA: 3'- -CCACGUGGa----GGGCga--GCGCGUGGU--CC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 6671 | 0.77 | 0.281821 |
Target: 5'- ---aCAUgUCCCGCUCGUGCugCAGGg -3' miRNA: 3'- ccacGUGgAGGGCGAGCGCGugGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 14481 | 0.71 | 0.598411 |
Target: 5'- --gGCGCUaCCCGCggggcgCGCGCACCAu- -3' miRNA: 3'- ccaCGUGGaGGGCGa-----GCGCGUGGUcc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 130820 | 0.7 | 0.646175 |
Target: 5'- gGGUGCACauCUCCCGCcUGCuGgACCGGc -3' miRNA: 3'- -CCACGUG--GAGGGCGaGCG-CgUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 95177 | 0.72 | 0.545581 |
Target: 5'- aGG-GCACCUCgCGCUCggcGCggaacuccacgcccgGCACCGGGu -3' miRNA: 3'- -CCaCGUGGAGgGCGAG---CG---------------CGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 86787 | 0.72 | 0.53259 |
Target: 5'- uGG-GCGCCUgCCGCggcaagaGCauGCACCAGGu -3' miRNA: 3'- -CCaCGUGGAgGGCGag-----CG--CGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 185076 | 0.72 | 0.505146 |
Target: 5'- --cGCGCCUgUCGCUgccgccCGCGCGCUGGGa -3' miRNA: 3'- ccaCGUGGAgGGCGA------GCGCGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 173861 | 0.75 | 0.349039 |
Target: 5'- aGGcUGCGCUcgUCCUGC-CGCaGCGCCAGGu -3' miRNA: 3'- -CC-ACGUGG--AGGGCGaGCG-CGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 108492 | 0.68 | 0.730934 |
Target: 5'- --aGCACUUccacuagcaCCCGCagGCGCACgCGGGa -3' miRNA: 3'- ccaCGUGGA---------GGGCGagCGCGUG-GUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 11556 | 0.68 | 0.721716 |
Target: 5'- ---aCGCCUCCgGCgccgUCGUGCGCCGGa -3' miRNA: 3'- ccacGUGGAGGgCG----AGCGCGUGGUCc -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 20290 | 0.69 | 0.703086 |
Target: 5'- cGGUGgAUCUCgCCgGCgccaUGCaGCACCAGGa -3' miRNA: 3'- -CCACgUGGAG-GG-CGa---GCG-CGUGGUCC- -5' |
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14378 | 5' | -60.4 | NC_003521.1 | + | 103377 | 0.69 | 0.684247 |
Target: 5'- cGGUGCgcgauACCUCCacggGCUCcuGCGCGCUGGu -3' miRNA: 3'- -CCACG-----UGGAGGg---CGAG--CGCGUGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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