miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 24586 0.78 0.248881
Target:  5'- cGUcCACCUCCCGCUCGUaggccucgucugcguGUGCCAGGa -3'
miRNA:   3'- cCAcGUGGAGGGCGAGCG---------------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 208693 0.71 0.580362
Target:  5'- uGGUGCACCgcgCCCGCUaccugcccgagaucaGCcGCGCCGc- -3'
miRNA:   3'- -CCACGUGGa--GGGCGAg--------------CG-CGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 211739 0.7 0.617494
Target:  5'- aGUGCGCCaCCaugaGCUCGaUGCccACCAGGa -3'
miRNA:   3'- cCACGUGGaGGg---CGAGC-GCG--UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 114257 0.66 0.863286
Target:  5'- --gGCgGCUUCCCGCugcccacggccuUCGCGCACgAGu -3'
miRNA:   3'- ccaCG-UGGAGGGCG------------AGCGCGUGgUCc -5'
14378 5' -60.4 NC_003521.1 + 173861 0.75 0.349039
Target:  5'- aGGcUGCGCUcgUCCUGC-CGCaGCGCCAGGu -3'
miRNA:   3'- -CC-ACGUGG--AGGGCGaGCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 99012 0.75 0.386693
Target:  5'- uGGUGCugUUgCCGCUCGaGguCCAGGc -3'
miRNA:   3'- -CCACGugGAgGGCGAGCgCguGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 185076 0.72 0.505146
Target:  5'- --cGCGCCUgUCGCUgccgccCGCGCGCUGGGa -3'
miRNA:   3'- ccaCGUGGAgGGCGA------GCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 184180 0.72 0.514229
Target:  5'- aGGUGCACCggCCCGUggugcgcuucuUCGUGgACCucuGGg -3'
miRNA:   3'- -CCACGUGGa-GGGCG-----------AGCGCgUGGu--CC- -5'
14378 5' -60.4 NC_003521.1 + 86787 0.72 0.53259
Target:  5'- uGG-GCGCCUgCCGCggcaagaGCauGCACCAGGu -3'
miRNA:   3'- -CCaCGUGGAgGGCGag-----CG--CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 148823 0.71 0.579415
Target:  5'- --cGCGCCUCgccgcucccgcuCCGUUCGCGCcggaucggccGCCGGGu -3'
miRNA:   3'- ccaCGUGGAG------------GGCGAGCGCG----------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 222547 0.72 0.541858
Target:  5'- cGGUGCGgcCCUCCCG-UCGCGgG-CAGGu -3'
miRNA:   3'- -CCACGU--GGAGGGCgAGCGCgUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 128864 0.72 0.514229
Target:  5'- uGUGCGCaacagacucaUCCUGC-CGcCGCGCCAGGu -3'
miRNA:   3'- cCACGUGg---------AGGGCGaGC-GCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 6671 0.77 0.281821
Target:  5'- ---aCAUgUCCCGCUCGUGCugCAGGg -3'
miRNA:   3'- ccacGUGgAGGGCGAGCGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 95177 0.72 0.545581
Target:  5'- aGG-GCACCUCgCGCUCggcGCggaacuccacgcccgGCACCGGGu -3'
miRNA:   3'- -CCaCGUGGAGgGCGAG---CG---------------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 174257 0.76 0.307404
Target:  5'- --cGCACgUUgCGCUgGCGCGCCAGGu -3'
miRNA:   3'- ccaCGUGgAGgGCGAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 111875 0.72 0.514229
Target:  5'- uGGUGCagacGCUgguggagaacgCCaCGCUgGCGCGCCAGGc -3'
miRNA:   3'- -CCACG----UGGa----------GG-GCGAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 88827 0.71 0.569963
Target:  5'- -aUGCACUUCUCGCU-GUGCACCAu- -3'
miRNA:   3'- ccACGUGGAGGGCGAgCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 14481 0.71 0.598411
Target:  5'- --gGCGCUaCCCGCggggcgCGCGCACCAu- -3'
miRNA:   3'- ccaCGUGGaGGGCGa-----GCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 69414 0.76 0.320848
Target:  5'- cGUGaGCCUCCUGCUgGUGgACCGGGa -3'
miRNA:   3'- cCACgUGGAGGGCGAgCGCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 164574 0.74 0.392175
Target:  5'- cGUGCGCCUCUCGCgccUCacgcucgaggacguGCGCGCCcAGGg -3'
miRNA:   3'- cCACGUGGAGGGCG---AG--------------CGCGUGG-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.