miRNA display CGI


Results 1 - 20 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 56659 1.11 0.001484
Target:  5'- cGGUGCACCUCCCGCUCGCGCACCAGGu -3'
miRNA:   3'- -CCACGUGGAGGGCGAGCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 145261 0.81 0.168037
Target:  5'- aGG-GCGCCUCCUcggccucggcggccaGCUCGCGCGCCGGc -3'
miRNA:   3'- -CCaCGUGGAGGG---------------CGAGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 24586 0.78 0.248881
Target:  5'- cGUcCACCUCCCGCUCGUaggccucgucugcguGUGCCAGGa -3'
miRNA:   3'- cCAcGUGGAGGGCGAGCG---------------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 6671 0.77 0.281821
Target:  5'- ---aCAUgUCCCGCUCGUGCugCAGGg -3'
miRNA:   3'- ccacGUGgAGGGCGAGCGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 174257 0.76 0.307404
Target:  5'- --cGCACgUUgCGCUgGCGCGCCAGGu -3'
miRNA:   3'- ccaCGUGgAGgGCGAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 69414 0.76 0.320848
Target:  5'- cGUGaGCCUCCUGCUgGUGgACCGGGa -3'
miRNA:   3'- cCACgUGGAGGGCGAgCGCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 173861 0.75 0.349039
Target:  5'- aGGcUGCGCUcgUCCUGC-CGCaGCGCCAGGu -3'
miRNA:   3'- -CC-ACGUGG--AGGGCGaGCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 53367 0.75 0.378951
Target:  5'- --aGCACCgUCCCGCUgacgcgGCGCACCAGc -3'
miRNA:   3'- ccaCGUGG-AGGGCGAg-----CGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 99012 0.75 0.386693
Target:  5'- uGGUGCugUUgCCGCUCGaGguCCAGGc -3'
miRNA:   3'- -CCACGugGAgGGCGAGCgCguGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 164574 0.74 0.392175
Target:  5'- cGUGCGCCUCUCGCgccUCacgcucgaggacguGCGCGCCcAGGg -3'
miRNA:   3'- cCACGUGGAGGGCG---AG--------------CGCGUGG-UCC- -5'
14378 5' -60.4 NC_003521.1 + 129774 0.74 0.426929
Target:  5'- --cGCGCCugUCCCGCgcacgUGCGCGCCgAGGc -3'
miRNA:   3'- ccaCGUGG--AGGGCGa----GCGCGUGG-UCC- -5'
14378 5' -60.4 NC_003521.1 + 34434 0.74 0.43527
Target:  5'- cGGUGCGaCUCCaCGUagGCGCugCGGGc -3'
miRNA:   3'- -CCACGUgGAGG-GCGagCGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 92054 0.73 0.443705
Target:  5'- cGGgGUGCCUCCCGUagcgaUgGCGgACCGGGg -3'
miRNA:   3'- -CCaCGUGGAGGGCG-----AgCGCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 225771 0.72 0.495235
Target:  5'- --cGCGCCgcUCgCGCUCGCGCcgcucgucaggguGCCAGGc -3'
miRNA:   3'- ccaCGUGG--AGgGCGAGCGCG-------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 195605 0.72 0.498829
Target:  5'- aGGUGCGCagccggCCCGCcagcuggUCGCGUugcugcagcuccgagGCCAGGg -3'
miRNA:   3'- -CCACGUGga----GGGCG-------AGCGCG---------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 185076 0.72 0.505146
Target:  5'- --cGCGCCUgUCGCUgccgccCGCGCGCUGGGa -3'
miRNA:   3'- ccaCGUGGAgGGCGA------GCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 184180 0.72 0.514229
Target:  5'- aGGUGCACCggCCCGUggugcgcuucuUCGUGgACCucuGGg -3'
miRNA:   3'- -CCACGUGGa-GGGCG-----------AGCGCgUGGu--CC- -5'
14378 5' -60.4 NC_003521.1 + 111875 0.72 0.514229
Target:  5'- uGGUGCagacGCUgguggagaacgCCaCGCUgGCGCGCCAGGc -3'
miRNA:   3'- -CCACG----UGGa----------GG-GCGAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 128864 0.72 0.514229
Target:  5'- uGUGCGCaacagacucaUCCUGC-CGcCGCGCCAGGu -3'
miRNA:   3'- cCACGUGg---------AGGGCGaGC-GCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 172645 0.72 0.53259
Target:  5'- --cGCGCC-CCCGUUggucUGCGCGCUGGGg -3'
miRNA:   3'- ccaCGUGGaGGGCGA----GCGCGUGGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.