miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 1864 0.68 0.721716
Target:  5'- gGGgcccgGCGCCUCUaauaccgcaGCUgGCGCagguACCGGGa -3'
miRNA:   3'- -CCa----CGUGGAGGg--------CGAgCGCG----UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 2389 0.7 0.636616
Target:  5'- -cUGCGCCUCCUGCccgaccUCGaccgcgaGCACUGGGa -3'
miRNA:   3'- ccACGUGGAGGGCG------AGCg------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 6671 0.77 0.281821
Target:  5'- ---aCAUgUCCCGCUCGUGCugCAGGg -3'
miRNA:   3'- ccacGUGgAGGGCGAGCGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 11556 0.68 0.721716
Target:  5'- ---aCGCCUCCgGCgccgUCGUGCGCCGGa -3'
miRNA:   3'- ccacGUGGAGGgCG----AGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 11836 0.67 0.784411
Target:  5'- cGUGCugCcggUCCUGCgccgccCGCGCACCuccucGGa -3'
miRNA:   3'- cCACGugG---AGGGCGa-----GCGCGUGGu----CC- -5'
14378 5' -60.4 NC_003521.1 + 14481 0.71 0.598411
Target:  5'- --gGCGCUaCCCGCggggcgCGCGCACCAu- -3'
miRNA:   3'- ccaCGUGGaGGGCGa-----GCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 14969 0.67 0.792948
Target:  5'- --cGCACCUgugCCCGCaccaccacgaGCGCGCCGuGGa -3'
miRNA:   3'- ccaCGUGGA---GGGCGag--------CGCGUGGU-CC- -5'
14378 5' -60.4 NC_003521.1 + 16387 0.7 0.636616
Target:  5'- --cGCACCUggaCCGCUCGCcCACCAc- -3'
miRNA:   3'- ccaCGUGGAg--GGCGAGCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 18721 0.69 0.674768
Target:  5'- --aGCGCCUCgagaCGCUgccgGCGCugCAGGg -3'
miRNA:   3'- ccaCGUGGAGg---GCGAg---CGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 18900 0.7 0.617494
Target:  5'- cGUGCAUCUUCCcCUCGCaCGCCuGGc -3'
miRNA:   3'- cCACGUGGAGGGcGAGCGcGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 19217 0.66 0.825764
Target:  5'- cGUGCgaccugGCUUUCgGCUCGCGCACgCAa- -3'
miRNA:   3'- cCACG------UGGAGGgCGAGCGCGUG-GUcc -5'
14378 5' -60.4 NC_003521.1 + 20290 0.69 0.703086
Target:  5'- cGGUGgAUCUCgCCgGCgccaUGCaGCACCAGGa -3'
miRNA:   3'- -CCACgUGGAG-GG-CGa---GCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 20739 0.69 0.703086
Target:  5'- cGGUGCAUCagCUGCguguaCGCGCugCuGGu -3'
miRNA:   3'- -CCACGUGGagGGCGa----GCGCGugGuCC- -5'
14378 5' -60.4 NC_003521.1 + 23287 0.66 0.848786
Target:  5'- cGUGCACCgcuUCCUGgUC-UGCACgCGGGu -3'
miRNA:   3'- cCACGUGG---AGGGCgAGcGCGUG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 24586 0.78 0.248881
Target:  5'- cGUcCACCUCCCGCUCGUaggccucgucugcguGUGCCAGGa -3'
miRNA:   3'- cCAcGUGGAGGGCGAGCG---------------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 24666 0.66 0.825764
Target:  5'- uGGUGguCACCUUCCug-UGCGC-CCAGGu -3'
miRNA:   3'- -CCAC--GUGGAGGGcgaGCGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 24707 0.66 0.825764
Target:  5'- --cGCgGCCUCCgCGC-CGCGCucaACCAGu -3'
miRNA:   3'- ccaCG-UGGAGG-GCGaGCGCG---UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 25174 0.68 0.721716
Target:  5'- --cGCugCUCCCGC-CGCG-ACCAugcGGa -3'
miRNA:   3'- ccaCGugGAGGGCGaGCGCgUGGU---CC- -5'
14378 5' -60.4 NC_003521.1 + 32145 0.68 0.738255
Target:  5'- cGGUGCACCaagcggcggaaggcgCCCGCguuguuccaucgaaaGUGCugCGGGu -3'
miRNA:   3'- -CCACGUGGa--------------GGGCGag-------------CGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 32895 0.68 0.746429
Target:  5'- cGGUGCugccGCCgugCCCGC-CGCccccggcguaggugGCGCCGGa -3'
miRNA:   3'- -CCACG----UGGa--GGGCGaGCG--------------CGUGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.