miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 226819 0.7 0.625141
Target:  5'- cGGUacaGCGCCaugggguccucgCCCGC-CGcCGCGCCGGGc -3'
miRNA:   3'- -CCA---CGUGGa-----------GGGCGaGC-GCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 85638 0.71 0.569963
Target:  5'- cGUGCACCUCCCccccggcaGC-CGCGgcCGCCAGc -3'
miRNA:   3'- cCACGUGGAGGG--------CGaGCGC--GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 153506 0.71 0.588899
Target:  5'- -cUGCGCCUCCaggCGCUCgcuGCGCACCu-- -3'
miRNA:   3'- ccACGUGGAGG---GCGAG---CGCGUGGucc -5'
14378 5' -60.4 NC_003521.1 + 152774 0.71 0.588899
Target:  5'- cGGcGuCGCCUCCUGCgccUUGCGCACCGc- -3'
miRNA:   3'- -CCaC-GUGGAGGGCG---AGCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 227950 0.7 0.605083
Target:  5'- uGGUGUACCUgcgggaaggCCCguaccgcugcgucuGCUCGCGCACguGa -3'
miRNA:   3'- -CCACGUGGA---------GGG--------------CGAGCGCGUGguCc -5'
14378 5' -60.4 NC_003521.1 + 110019 0.7 0.607945
Target:  5'- uGUGCACCcggcUCUCGUgggCGCGCugCGGu -3'
miRNA:   3'- cCACGUGG----AGGGCGa--GCGCGugGUCc -5'
14378 5' -60.4 NC_003521.1 + 113034 0.7 0.617494
Target:  5'- uGGUGCGCCUCUuucacaaacgCGC-CGUGCuCCAGc -3'
miRNA:   3'- -CCACGUGGAGG----------GCGaGCGCGuGGUCc -5'
14378 5' -60.4 NC_003521.1 + 18900 0.7 0.617494
Target:  5'- cGUGCAUCUUCCcCUCGCaCGCCuGGc -3'
miRNA:   3'- cCACGUGGAGGGcGAGCGcGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 164935 0.7 0.617494
Target:  5'- cGG-GCcCCUCCUccggcgGCUCGCGuCGCCGGa -3'
miRNA:   3'- -CCaCGuGGAGGG------CGAGCGC-GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 204187 0.71 0.56902
Target:  5'- cGUGCGCCUUCCaguccauGCagGCGCACCAc- -3'
miRNA:   3'- cCACGUGGAGGG-------CGagCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 137623 0.71 0.56055
Target:  5'- --gGaCGCCUaCCGCUCGCGCAUCGcGGu -3'
miRNA:   3'- ccaC-GUGGAgGGCGAGCGCGUGGU-CC- -5'
14378 5' -60.4 NC_003521.1 + 74609 0.72 0.541858
Target:  5'- cGGcGCGCCUCgCCGC-CGCGCcaacAgCGGGg -3'
miRNA:   3'- -CCaCGUGGAG-GGCGaGCGCG----UgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 145261 0.81 0.168037
Target:  5'- aGG-GCGCCUCCUcggccucggcggccaGCUCGCGCGCCGGc -3'
miRNA:   3'- -CCaCGUGGAGGG---------------CGAGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 53367 0.75 0.378951
Target:  5'- --aGCACCgUCCCGCUgacgcgGCGCACCAGc -3'
miRNA:   3'- ccaCGUGG-AGGGCGAg-----CGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 129774 0.74 0.426929
Target:  5'- --cGCGCCugUCCCGCgcacgUGCGCGCCgAGGc -3'
miRNA:   3'- ccaCGUGG--AGGGCGa----GCGCGUGG-UCC- -5'
14378 5' -60.4 NC_003521.1 + 34434 0.74 0.43527
Target:  5'- cGGUGCGaCUCCaCGUagGCGCugCGGGc -3'
miRNA:   3'- -CCACGUgGAGG-GCGagCGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 92054 0.73 0.443705
Target:  5'- cGGgGUGCCUCCCGUagcgaUgGCGgACCGGGg -3'
miRNA:   3'- -CCaCGUGGAGGGCG-----AgCGCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 225771 0.72 0.495235
Target:  5'- --cGCGCCgcUCgCGCUCGCGCcgcucgucaggguGCCAGGc -3'
miRNA:   3'- ccaCGUGG--AGgGCGAGCGCG-------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 195605 0.72 0.498829
Target:  5'- aGGUGCGCagccggCCCGCcagcuggUCGCGUugcugcagcuccgagGCCAGGg -3'
miRNA:   3'- -CCACGUGga----GGGCG-------AGCGCG---------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 172645 0.72 0.53259
Target:  5'- --cGCGCC-CCCGUUggucUGCGCGCUGGGg -3'
miRNA:   3'- ccaCGUGGaGGGCGA----GCGCGUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.