miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 172937 0.66 0.848786
Target:  5'- gGGUGCACCUCCa--UC-UGCACCugcugacgguguAGGa -3'
miRNA:   3'- -CCACGUGGAGGgcgAGcGCGUGG------------UCC- -5'
14378 5' -60.4 NC_003521.1 + 148606 0.66 0.848786
Target:  5'- cGG-GC-CCUCacagCGCUCGuCGCgcgGCCGGGc -3'
miRNA:   3'- -CCaCGuGGAGg---GCGAGC-GCG---UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 114257 0.66 0.863286
Target:  5'- --gGCgGCUUCCCGCugcccacggccuUCGCGCACgAGu -3'
miRNA:   3'- ccaCG-UGGAGGGCG------------AGCGCGUGgUCc -5'
14378 5' -60.4 NC_003521.1 + 19217 0.66 0.825764
Target:  5'- cGUGCgaccugGCUUUCgGCUCGCGCACgCAa- -3'
miRNA:   3'- cCACG------UGGAGGgCGAGCGCGUG-GUcc -5'
14378 5' -60.4 NC_003521.1 + 162226 0.66 0.8336
Target:  5'- cGGUGCcucuccGCUUCCCGCgaCGCuCACCGc- -3'
miRNA:   3'- -CCACG------UGGAGGGCGa-GCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 75916 0.66 0.848786
Target:  5'- uGG-GCACgUUgUGCUCGCGCACg--- -3'
miRNA:   3'- -CCaCGUGgAGgGCGAGCGCGUGgucc -5'
14378 5' -60.4 NC_003521.1 + 204223 0.66 0.825764
Target:  5'- cGUGCgagucgucgGCCaCCCGCcgccaggccaguUCGCGCAUgGGGa -3'
miRNA:   3'- cCACG---------UGGaGGGCG------------AGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 212237 0.66 0.848786
Target:  5'- cGGUGCGCagcagCCCGCcgucCGCGUagucggugGCCGGcGg -3'
miRNA:   3'- -CCACGUGga---GGGCGa---GCGCG--------UGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 75040 0.66 0.848786
Target:  5'- -cUGCACCUCgUGCgaggaGCACCAGa -3'
miRNA:   3'- ccACGUGGAGgGCGagcg-CGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 127840 0.66 0.8336
Target:  5'- aGGgccccgGCGCCagCCCGUcgggcaggUUGCcCACCAGGa -3'
miRNA:   3'- -CCa-----CGUGGa-GGGCG--------AGCGcGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 225506 0.66 0.848786
Target:  5'- --cGCGCUgaucaCCCGCUCG-GCGCCGu- -3'
miRNA:   3'- ccaCGUGGa----GGGCGAGCgCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 121352 0.66 0.856125
Target:  5'- cGUGCGCCgucuugCCCgGCUUGaUG-ACCAGGc -3'
miRNA:   3'- cCACGUGGa-----GGG-CGAGC-GCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 165778 0.66 0.825764
Target:  5'- cGUGCcgaagGCCagCCCGCUgGCGCugCcgucgcaguAGGg -3'
miRNA:   3'- cCACG-----UGGa-GGGCGAgCGCGugG---------UCC- -5'
14378 5' -60.4 NC_003521.1 + 121955 0.66 0.841276
Target:  5'- -cUGCACCUCCuCGCcCGUGUgaUAGGu -3'
miRNA:   3'- ccACGUGGAGG-GCGaGCGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 87319 0.66 0.8336
Target:  5'- gGGUGCGg-UCCaCGCUgGCGCugACCAGa -3'
miRNA:   3'- -CCACGUggAGG-GCGAgCGCG--UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 53665 0.66 0.841276
Target:  5'- --cGUugCUUCCGCUCcugcCGCcGCCGGGc -3'
miRNA:   3'- ccaCGugGAGGGCGAGc---GCG-UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 45121 0.66 0.841276
Target:  5'- --gGCGCCguaUGUUCGUGCACCGGc -3'
miRNA:   3'- ccaCGUGGaggGCGAGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 214780 0.66 0.841276
Target:  5'- -----cCCUCCCGCUCGC-CGCCGu- -3'
miRNA:   3'- ccacguGGAGGGCGAGCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 240440 0.66 0.856125
Target:  5'- aGUGUugUUCCCGCgugaggCGgGCAgCGGu -3'
miRNA:   3'- cCACGugGAGGGCGa-----GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 33586 0.66 0.825764
Target:  5'- cGGUagAUCUUCUGgUCGCGCACCAc- -3'
miRNA:   3'- -CCAcgUGGAGGGCgAGCGCGUGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.