miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 33586 0.66 0.825764
Target:  5'- cGGUagAUCUUCUGgUCGCGCACCAc- -3'
miRNA:   3'- -CCAcgUGGAGGGCgAGCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 34434 0.74 0.43527
Target:  5'- cGGUGCGaCUCCaCGUagGCGCugCGGGc -3'
miRNA:   3'- -CCACGUgGAGG-GCGagCGCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 34572 0.69 0.684247
Target:  5'- gGGUGCACCaggCUgaCGC-CGgGCugCAGGc -3'
miRNA:   3'- -CCACGUGGa--GG--GCGaGCgCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 36746 0.69 0.684247
Target:  5'- cGGUGCccuuCCUCUCGCUguccaaggaCGCGCgugGCCuGGc -3'
miRNA:   3'- -CCACGu---GGAGGGCGA---------GCGCG---UGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 40212 0.66 0.856125
Target:  5'- aGUGUugUUCCCGCgugaggCGgGCAgCGGu -3'
miRNA:   3'- cCACGugGAGGGCGa-----GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 43341 0.68 0.766984
Target:  5'- --cGCGCCguccggCCCGC-CGCGCgugaacauccGCCAGa -3'
miRNA:   3'- ccaCGUGGa-----GGGCGaGCGCG----------UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 43547 0.67 0.801359
Target:  5'- --cGC-CCUCCCGCUcccCGC-CGCCGGc -3'
miRNA:   3'- ccaCGuGGAGGGCGA---GCGcGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 44047 0.7 0.617494
Target:  5'- cGUuUACCgcgCCCGCggUCGCGCcgGCCGGGg -3'
miRNA:   3'- cCAcGUGGa--GGGCG--AGCGCG--UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 45121 0.66 0.841276
Target:  5'- --gGCGCCguaUGUUCGUGCACCGGc -3'
miRNA:   3'- ccaCGUGGaggGCGAGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 46528 0.68 0.766984
Target:  5'- cGG-GCGuCUUCUC-CagGCGCACCAGGg -3'
miRNA:   3'- -CCaCGU-GGAGGGcGagCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 48576 0.66 0.8336
Target:  5'- aGGUGaCGgcuaacggccacCCUCCCGCg---GCGCCGGGu -3'
miRNA:   3'- -CCAC-GU------------GGAGGGCGagcgCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 48578 0.68 0.72079
Target:  5'- aGGUGCGCUguaagugcaaCCCGCUgucacucCGUGCACCGu- -3'
miRNA:   3'- -CCACGUGGa---------GGGCGA-------GCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 53367 0.75 0.378951
Target:  5'- --aGCACCgUCCCGCUgacgcgGCGCACCAGc -3'
miRNA:   3'- ccaCGUGG-AGGGCGAg-----CGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 53665 0.66 0.841276
Target:  5'- --cGUugCUUCCGCUCcugcCGCcGCCGGGc -3'
miRNA:   3'- ccaCGugGAGGGCGAGc---GCG-UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 53758 0.68 0.740077
Target:  5'- --cGCGCCcUCCGCUCGCugGCACCc-- -3'
miRNA:   3'- ccaCGUGGaGGGCGAGCG--CGUGGucc -5'
14378 5' -60.4 NC_003521.1 + 54317 0.66 0.863286
Target:  5'- --aGCGCgUCgUGCUC-CGuCACCAGGc -3'
miRNA:   3'- ccaCGUGgAGgGCGAGcGC-GUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 55736 0.67 0.801359
Target:  5'- --aGCGCCUCCCaGCgcgCGgGCGgCAGc -3'
miRNA:   3'- ccaCGUGGAGGG-CGa--GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 56659 1.11 0.001484
Target:  5'- cGGUGCACCUCCCGCUCGCGCACCAGGu -3'
miRNA:   3'- -CCACGUGGAGGGCGAGCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 59651 0.7 0.636616
Target:  5'- uGGUGCGgCagaCGCUgGCGCGCCuGGa -3'
miRNA:   3'- -CCACGUgGaggGCGAgCGCGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 66348 0.67 0.801359
Target:  5'- --aGCaACUggaUCCCGCUCGCGUGgCCGGcGg -3'
miRNA:   3'- ccaCG-UGG---AGGGCGAGCGCGU-GGUC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.