miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 205176 0.68 0.740077
Target:  5'- --aGCucGCCUgCCGCUCGCaGCGCgugCGGGa -3'
miRNA:   3'- ccaCG--UGGAgGGCGAGCG-CGUG---GUCC- -5'
14378 5' -60.4 NC_003521.1 + 204851 0.67 0.792948
Target:  5'- aGGUGUAguCCaCCCGgauCUCGgGCACgCAGGu -3'
miRNA:   3'- -CCACGU--GGaGGGC---GAGCgCGUG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 204223 0.66 0.825764
Target:  5'- cGUGCgagucgucgGCCaCCCGCcgccaggccaguUCGCGCAUgGGGa -3'
miRNA:   3'- cCACG---------UGGaGGGCG------------AGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 204187 0.71 0.56902
Target:  5'- cGUGCGCCUUCCaguccauGCagGCGCACCAc- -3'
miRNA:   3'- cCACGUGGAGGG-------CGagCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 204116 0.69 0.684247
Target:  5'- -cUGCGCCUCCaccuGCUCGgGCcaggcGCCGGa -3'
miRNA:   3'- ccACGUGGAGGg---CGAGCgCG-----UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 202616 0.7 0.636616
Target:  5'- -cUGCGCCUCCUGCccgaccUCGaccgcgaGCACUGGGa -3'
miRNA:   3'- ccACGUGGAGGGCG------AGCg------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 202091 0.68 0.721716
Target:  5'- gGGgcccgGCGCCUCUaauaccgcaGCUgGCGCagguACCGGGa -3'
miRNA:   3'- -CCa----CGUGGAGGg--------CGAgCGCG----UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 197855 0.68 0.740077
Target:  5'- cGGUggGCGCCggcgggUCgCGCUCGCuggGCugCAGGc -3'
miRNA:   3'- -CCA--CGUGG------AGgGCGAGCG---CGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 197687 0.72 0.536291
Target:  5'- cGUGCACCUCCacgcccagcgccgagCGCUCGCcgcaGCGCUuGGu -3'
miRNA:   3'- cCACGUGGAGG---------------GCGAGCG----CGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 197022 0.67 0.801359
Target:  5'- aGUGCACCUCCU-CUCGUuaGCGagaAGGg -3'
miRNA:   3'- cCACGUGGAGGGcGAGCG--CGUgg-UCC- -5'
14378 5' -60.4 NC_003521.1 + 196275 0.66 0.856125
Target:  5'- aGG-GCGuCCUCauGUgagCGCGUGCCGGGc -3'
miRNA:   3'- -CCaCGU-GGAGggCGa--GCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 195605 0.72 0.498829
Target:  5'- aGGUGCGCagccggCCCGCcagcuggUCGCGUugcugcagcuccgagGCCAGGg -3'
miRNA:   3'- -CCACGUGga----GGGCG-------AGCGCG---------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 194557 0.68 0.75811
Target:  5'- -aUGCACCUCUgCGCUacCGC-CACCgAGGg -3'
miRNA:   3'- ccACGUGGAGG-GCGA--GCGcGUGG-UCC- -5'
14378 5' -60.4 NC_003521.1 + 194297 0.67 0.775753
Target:  5'- uGGUGCGCCUggagaagaCGCcCGUGUGCCAGc -3'
miRNA:   3'- -CCACGUGGAgg------GCGaGCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 185076 0.72 0.505146
Target:  5'- --cGCGCCUgUCGCUgccgccCGCGCGCUGGGa -3'
miRNA:   3'- ccaCGUGGAgGGCGA------GCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 184180 0.72 0.514229
Target:  5'- aGGUGCACCggCCCGUggugcgcuucuUCGUGgACCucuGGg -3'
miRNA:   3'- -CCACGUGGa-GGGCG-----------AGCGCgUGGu--CC- -5'
14378 5' -60.4 NC_003521.1 + 180689 0.68 0.730015
Target:  5'- cGUGCucgacACCUCCuCGCucagcagUCGCGuCACCAGc -3'
miRNA:   3'- cCACG-----UGGAGG-GCG-------AGCGC-GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 180524 0.69 0.716152
Target:  5'- gGGUGUcgucucaucgucaccACCgUCuCCGCg-GCGUACCGGGg -3'
miRNA:   3'- -CCACG---------------UGG-AG-GGCGagCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 180366 0.66 0.863286
Target:  5'- cGGUGCugCUCgUGUUgGUgGUACUGGGc -3'
miRNA:   3'- -CCACGugGAGgGCGAgCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 175573 0.66 0.848786
Target:  5'- --aGCAguuCCUCuuGCgCGCGCGgauCCAGGc -3'
miRNA:   3'- ccaCGU---GGAGggCGaGCGCGU---GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.