miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 174257 0.76 0.307404
Target:  5'- --cGCACgUUgCGCUgGCGCGCCAGGu -3'
miRNA:   3'- ccaCGUGgAGgGCGAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 173861 0.75 0.349039
Target:  5'- aGGcUGCGCUcgUCCUGC-CGCaGCGCCAGGu -3'
miRNA:   3'- -CC-ACGUGG--AGGGCGaGCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 172937 0.66 0.848786
Target:  5'- gGGUGCACCUCCa--UC-UGCACCugcugacgguguAGGa -3'
miRNA:   3'- -CCACGUGGAGGgcgAGcGCGUGG------------UCC- -5'
14378 5' -60.4 NC_003521.1 + 172645 0.72 0.53259
Target:  5'- --cGCGCC-CCCGUUggucUGCGCGCUGGGg -3'
miRNA:   3'- ccaCGUGGaGGGCGA----GCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 171204 0.68 0.766984
Target:  5'- uGGUGCACUgCUCGCUCuGCGgcaguCAgCGGGu -3'
miRNA:   3'- -CCACGUGGaGGGCGAG-CGC-----GUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 169001 0.66 0.825764
Target:  5'- cGGcUGCGCCgucUCCCuCUguuguuuugugCGCGCGCCGGu -3'
miRNA:   3'- -CC-ACGUGG---AGGGcGA-----------GCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 166675 0.66 0.841276
Target:  5'- --gGCACCUgggcCCCGUg-GCGCGCCAc- -3'
miRNA:   3'- ccaCGUGGA----GGGCGagCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 165840 0.69 0.693689
Target:  5'- --cGCGCa-CCCGCUCGgGCGagcaCAGGa -3'
miRNA:   3'- ccaCGUGgaGGGCGAGCgCGUg---GUCC- -5'
14378 5' -60.4 NC_003521.1 + 165778 0.66 0.825764
Target:  5'- cGUGCcgaagGCCagCCCGCUgGCGCugCcgucgcaguAGGg -3'
miRNA:   3'- cCACG-----UGGa-GGGCGAgCGCGugG---------UCC- -5'
14378 5' -60.4 NC_003521.1 + 164935 0.7 0.617494
Target:  5'- cGG-GCcCCUCCUccggcgGCUCGCGuCGCCGGa -3'
miRNA:   3'- -CCaCGuGGAGGG------CGAGCGC-GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 164574 0.74 0.392175
Target:  5'- cGUGCGCCUCUCGCgccUCacgcucgaggacguGCGCGCCcAGGg -3'
miRNA:   3'- cCACGUGGAGGGCG---AG--------------CGCGUGG-UCC- -5'
14378 5' -60.4 NC_003521.1 + 162913 0.67 0.801359
Target:  5'- gGGUGacggggACCUcaaggagaaCCUGUUCGUGCGCgGGGg -3'
miRNA:   3'- -CCACg-----UGGA---------GGGCGAGCGCGUGgUCC- -5'
14378 5' -60.4 NC_003521.1 + 162628 0.67 0.809637
Target:  5'- --aGCGCCgcgCCCGCUC-CGCACg--- -3'
miRNA:   3'- ccaCGUGGa--GGGCGAGcGCGUGgucc -5'
14378 5' -60.4 NC_003521.1 + 162326 0.69 0.688029
Target:  5'- cGUGU-CCggucggCCCGUccgagguaagucacgUCGCGCGCCGGGc -3'
miRNA:   3'- cCACGuGGa-----GGGCG---------------AGCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 162226 0.66 0.8336
Target:  5'- cGGUGCcucuccGCUUCCCGCgaCGCuCACCGc- -3'
miRNA:   3'- -CCACG------UGGAGGGCGa-GCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 161994 0.66 0.863286
Target:  5'- uGGUGCuCCgucaaCCGUUacgacugGCGCcACCAGGg -3'
miRNA:   3'- -CCACGuGGag---GGCGAg------CGCG-UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 157118 0.66 0.856125
Target:  5'- -cUGgACCccuuggacgCCCGCUCGCGCGuCCAc- -3'
miRNA:   3'- ccACgUGGa--------GGGCGAGCGCGU-GGUcc -5'
14378 5' -60.4 NC_003521.1 + 156601 0.67 0.792948
Target:  5'- uGGUGCagcgcgGCCUCUCGCgccuggugcugCGCGaCGCCcuGGGc -3'
miRNA:   3'- -CCACG------UGGAGGGCGa----------GCGC-GUGG--UCC- -5'
14378 5' -60.4 NC_003521.1 + 156183 0.68 0.75811
Target:  5'- --gGCAUCUCgCCGgUgGCGCGUCAGGa -3'
miRNA:   3'- ccaCGUGGAG-GGCgAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 153506 0.71 0.588899
Target:  5'- -cUGCGCCUCCaggCGCUCgcuGCGCACCu-- -3'
miRNA:   3'- ccACGUGGAGG---GCGAG---CGCGUGGucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.