miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 86787 0.72 0.53259
Target:  5'- uGG-GCGCCUgCCGCggcaagaGCauGCACCAGGu -3'
miRNA:   3'- -CCaCGUGGAgGGCGag-----CG--CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 197687 0.72 0.536291
Target:  5'- cGUGCACCUCCacgcccagcgccgagCGCUCGCcgcaGCGCUuGGu -3'
miRNA:   3'- cCACGUGGAGG---------------GCGAGCG----CGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 74609 0.72 0.541858
Target:  5'- cGGcGCGCCUCgCCGC-CGCGCcaacAgCGGGg -3'
miRNA:   3'- -CCaCGUGGAG-GGCGaGCGCG----UgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 222547 0.72 0.541858
Target:  5'- cGGUGCGgcCCUCCCG-UCGCGgG-CAGGu -3'
miRNA:   3'- -CCACGU--GGAGGGCgAGCGCgUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 95177 0.72 0.545581
Target:  5'- aGG-GCACCUCgCGCUCggcGCggaacuccacgcccgGCACCGGGu -3'
miRNA:   3'- -CCaCGUGGAGgGCGAG---CG---------------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 137623 0.71 0.56055
Target:  5'- --gGaCGCCUaCCGCUCGCGCAUCGcGGu -3'
miRNA:   3'- ccaC-GUGGAgGGCGAGCGCGUGGU-CC- -5'
14378 5' -60.4 NC_003521.1 + 204187 0.71 0.56902
Target:  5'- cGUGCGCCUUCCaguccauGCagGCGCACCAc- -3'
miRNA:   3'- cCACGUGGAGGG-------CGagCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 88827 0.71 0.569963
Target:  5'- -aUGCACUUCUCGCU-GUGCACCAu- -3'
miRNA:   3'- ccACGUGGAGGGCGAgCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 85638 0.71 0.569963
Target:  5'- cGUGCACCUCCCccccggcaGC-CGCGgcCGCCAGc -3'
miRNA:   3'- cCACGUGGAGGG--------CGaGCGC--GUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 148823 0.71 0.579415
Target:  5'- --cGCGCCUCgccgcucccgcuCCGUUCGCGCcggaucggccGCCGGGu -3'
miRNA:   3'- ccaCGUGGAG------------GGCGAGCGCG----------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 208693 0.71 0.580362
Target:  5'- uGGUGCACCgcgCCCGCUaccugcccgagaucaGCcGCGCCGc- -3'
miRNA:   3'- -CCACGUGGa--GGGCGAg--------------CG-CGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 152774 0.71 0.588899
Target:  5'- cGGcGuCGCCUCCUGCgccUUGCGCACCGc- -3'
miRNA:   3'- -CCaC-GUGGAGGGCG---AGCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 153506 0.71 0.588899
Target:  5'- -cUGCGCCUCCaggCGCUCgcuGCGCACCu-- -3'
miRNA:   3'- ccACGUGGAGG---GCGAG---CGCGUGGucc -5'
14378 5' -60.4 NC_003521.1 + 14481 0.71 0.598411
Target:  5'- --gGCGCUaCCCGCggggcgCGCGCACCAu- -3'
miRNA:   3'- ccaCGUGGaGGGCGa-----GCGCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 227950 0.7 0.605083
Target:  5'- uGGUGUACCUgcgggaaggCCCguaccgcugcgucuGCUCGCGCACguGa -3'
miRNA:   3'- -CCACGUGGA---------GGG--------------CGAGCGCGUGguCc -5'
14378 5' -60.4 NC_003521.1 + 110019 0.7 0.607945
Target:  5'- uGUGCACCcggcUCUCGUgggCGCGCugCGGu -3'
miRNA:   3'- cCACGUGG----AGGGCGa--GCGCGugGUCc -5'
14378 5' -60.4 NC_003521.1 + 211739 0.7 0.617494
Target:  5'- aGUGCGCCaCCaugaGCUCGaUGCccACCAGGa -3'
miRNA:   3'- cCACGUGGaGGg---CGAGC-GCG--UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 18900 0.7 0.617494
Target:  5'- cGUGCAUCUUCCcCUCGCaCGCCuGGc -3'
miRNA:   3'- cCACGUGGAGGGcGAGCGcGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 113034 0.7 0.617494
Target:  5'- uGGUGCGCCUCUuucacaaacgCGC-CGUGCuCCAGc -3'
miRNA:   3'- -CCACGUGGAGG----------GCGaGCGCGuGGUCc -5'
14378 5' -60.4 NC_003521.1 + 164935 0.7 0.617494
Target:  5'- cGG-GCcCCUCCUccggcgGCUCGCGuCGCCGGa -3'
miRNA:   3'- -CCaCGuGGAGGG------CGAGCGC-GUGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.