miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 240440 0.66 0.856125
Target:  5'- aGUGUugUUCCCGCgugaggCGgGCAgCGGu -3'
miRNA:   3'- cCACGugGAGGGCGa-----GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 238109 0.67 0.817774
Target:  5'- cGGUGacgGCgCUCCCGCacgagUgGCGUuCCGGGg -3'
miRNA:   3'- -CCACg--UG-GAGGGCG-----AgCGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 233086 0.66 0.863286
Target:  5'- --cGcCGCCUCcgCCGCUCGCGcCGCCc-- -3'
miRNA:   3'- ccaC-GUGGAG--GGCGAGCGC-GUGGucc -5'
14378 5' -60.4 NC_003521.1 + 227950 0.7 0.605083
Target:  5'- uGGUGUACCUgcgggaaggCCCguaccgcugcgucuGCUCGCGCACguGa -3'
miRNA:   3'- -CCACGUGGA---------GGG--------------CGAGCGCGUGguCc -5'
14378 5' -60.4 NC_003521.1 + 226819 0.7 0.625141
Target:  5'- cGGUacaGCGCCaugggguccucgCCCGC-CGcCGCGCCGGGc -3'
miRNA:   3'- -CCA---CGUGGa-----------GGGCGaGC-GCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 226341 0.66 0.825764
Target:  5'- uGGUGCGCgCgcCCCGCggguaGCGC-CgCGGGa -3'
miRNA:   3'- -CCACGUG-Ga-GGGCGag---CGCGuG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 225878 0.69 0.689917
Target:  5'- cGGUGCuccaugcgcgucugGCgCUgCCGCUCGCGCucgaagcGCCGGu -3'
miRNA:   3'- -CCACG--------------UG-GAgGGCGAGCGCG-------UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 225771 0.72 0.495235
Target:  5'- --cGCGCCgcUCgCGCUCGCGCcgcucgucaggguGCCAGGc -3'
miRNA:   3'- ccaCGUGG--AGgGCGAGCGCG-------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 225506 0.66 0.848786
Target:  5'- --cGCGCUgaucaCCCGCUCG-GCGCCGu- -3'
miRNA:   3'- ccaCGUGGa----GGGCGAGCgCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 224078 0.67 0.817774
Target:  5'- --cGU-CCUCCgGCgggcgCGCGCGCCGGcGg -3'
miRNA:   3'- ccaCGuGGAGGgCGa----GCGCGUGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 222547 0.72 0.541858
Target:  5'- cGGUGCGgcCCUCCCG-UCGCGgG-CAGGu -3'
miRNA:   3'- -CCACGU--GGAGGGCgAGCGCgUgGUCC- -5'
14378 5' -60.4 NC_003521.1 + 218361 0.7 0.646175
Target:  5'- --aGCGCCaCCCGCUCGCcaaGCgACgCAGGu -3'
miRNA:   3'- ccaCGUGGaGGGCGAGCG---CG-UG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 217521 0.66 0.856125
Target:  5'- cGGUGCugUagaCCCGCgUGCagACCAGGa -3'
miRNA:   3'- -CCACGugGa--GGGCGaGCGcgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 214780 0.66 0.841276
Target:  5'- -----cCCUCCCGCUCGC-CGCCGu- -3'
miRNA:   3'- ccacguGGAGGGCGAGCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 214530 0.68 0.766984
Target:  5'- cGGUGC-CCUCCaagauGCccaGCaccaGCACCGGGg -3'
miRNA:   3'- -CCACGuGGAGGg----CGag-CG----CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 212237 0.66 0.848786
Target:  5'- cGGUGCGCagcagCCCGCcgucCGCGUagucggugGCCGGcGg -3'
miRNA:   3'- -CCACGUGga---GGGCGa---GCGCG--------UGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 211739 0.7 0.617494
Target:  5'- aGUGCGCCaCCaugaGCUCGaUGCccACCAGGa -3'
miRNA:   3'- cCACGUGGaGGg---CGAGC-GCG--UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 208693 0.71 0.580362
Target:  5'- uGGUGCACCgcgCCCGCUaccugcccgagaucaGCcGCGCCGc- -3'
miRNA:   3'- -CCACGUGGa--GGGCGAg--------------CG-CGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 207570 0.69 0.712431
Target:  5'- --cGCGCCggCCUGCUgGCGUguGCCAGc -3'
miRNA:   3'- ccaCGUGGa-GGGCGAgCGCG--UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 206444 0.66 0.8336
Target:  5'- --aGCGCCaccaCCUGCUggUGCGCAacgcCCAGGa -3'
miRNA:   3'- ccaCGUGGa---GGGCGA--GCGCGU----GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.