miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 161994 0.66 0.863286
Target:  5'- uGGUGCuCCgucaaCCGUUacgacugGCGCcACCAGGg -3'
miRNA:   3'- -CCACGuGGag---GGCGAg------CGCG-UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 114257 0.66 0.863286
Target:  5'- --gGCgGCUUCCCGCugcccacggccuUCGCGCACgAGu -3'
miRNA:   3'- ccaCG-UGGAGGGCG------------AGCGCGUGgUCc -5'
14378 5' -60.4 NC_003521.1 + 54317 0.66 0.863286
Target:  5'- --aGCGCgUCgUGCUC-CGuCACCAGGc -3'
miRNA:   3'- ccaCGUGgAGgGCGAGcGC-GUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 233086 0.66 0.863286
Target:  5'- --cGcCGCCUCcgCCGCUCGCGcCGCCc-- -3'
miRNA:   3'- ccaC-GUGGAG--GGCGAGCGC-GUGGucc -5'
14378 5' -60.4 NC_003521.1 + 180366 0.66 0.863286
Target:  5'- cGGUGCugCUCgUGUUgGUgGUACUGGGc -3'
miRNA:   3'- -CCACGugGAGgGCGAgCG-CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 145986 0.66 0.862578
Target:  5'- uGGcGCGCUUCCCGCUgcCGgcuuuugucaaucCGCGCCAc- -3'
miRNA:   3'- -CCaCGUGGAGGGCGA--GC-------------GCGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 85222 0.66 0.861157
Target:  5'- cGGUcGcCACCUCCUGCUgcugcucucguugcUGCuGCACCAc- -3'
miRNA:   3'- -CCA-C-GUGGAGGGCGA--------------GCG-CGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 121352 0.66 0.856125
Target:  5'- cGUGCGCCgucuugCCCgGCUUGaUG-ACCAGGc -3'
miRNA:   3'- cCACGUGGa-----GGG-CGAGC-GCgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 157118 0.66 0.856125
Target:  5'- -cUGgACCccuuggacgCCCGCUCGCGCGuCCAc- -3'
miRNA:   3'- ccACgUGGa--------GGGCGAGCGCGU-GGUcc -5'
14378 5' -60.4 NC_003521.1 + 40212 0.66 0.856125
Target:  5'- aGUGUugUUCCCGCgugaggCGgGCAgCGGu -3'
miRNA:   3'- cCACGugGAGGGCGa-----GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 196275 0.66 0.856125
Target:  5'- aGG-GCGuCCUCauGUgagCGCGUGCCGGGc -3'
miRNA:   3'- -CCaCGU-GGAGggCGa--GCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 217521 0.66 0.856125
Target:  5'- cGGUGCugUagaCCCGCgUGCagACCAGGa -3'
miRNA:   3'- -CCACGugGa--GGGCGaGCGcgUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 240440 0.66 0.856125
Target:  5'- aGUGUugUUCCCGCgugaggCGgGCAgCGGu -3'
miRNA:   3'- cCACGugGAGGGCGa-----GCgCGUgGUCc -5'
14378 5' -60.4 NC_003521.1 + 23287 0.66 0.848786
Target:  5'- cGUGCACCgcuUCCUGgUC-UGCACgCGGGu -3'
miRNA:   3'- cCACGUGG---AGGGCgAGcGCGUG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 128360 0.66 0.848786
Target:  5'- aGGUG-GCCcCgCCGggCGCGCccACCAGGg -3'
miRNA:   3'- -CCACgUGGaG-GGCgaGCGCG--UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 175573 0.66 0.848786
Target:  5'- --aGCAguuCCUCuuGCgCGCGCGgauCCAGGc -3'
miRNA:   3'- ccaCGU---GGAGggCGaGCGCGU---GGUCC- -5'
14378 5' -60.4 NC_003521.1 + 172937 0.66 0.848786
Target:  5'- gGGUGCACCUCCa--UC-UGCACCugcugacgguguAGGa -3'
miRNA:   3'- -CCACGUGGAGGgcgAGcGCGUGG------------UCC- -5'
14378 5' -60.4 NC_003521.1 + 75916 0.66 0.848786
Target:  5'- uGG-GCACgUUgUGCUCGCGCACg--- -3'
miRNA:   3'- -CCaCGUGgAGgGCGAGCGCGUGgucc -5'
14378 5' -60.4 NC_003521.1 + 212237 0.66 0.848786
Target:  5'- cGGUGCGCagcagCCCGCcgucCGCGUagucggugGCCGGcGg -3'
miRNA:   3'- -CCACGUGga---GGGCGa---GCGCG--------UGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 75040 0.66 0.848786
Target:  5'- -cUGCACCUCgUGCgaggaGCACCAGa -3'
miRNA:   3'- ccACGUGGAGgGCGagcg-CGUGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.