miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14378 5' -60.4 NC_003521.1 + 59651 0.7 0.636616
Target:  5'- uGGUGCGgCagaCGCUgGCGCGCCuGGa -3'
miRNA:   3'- -CCACGUgGaggGCGAgCGCGUGGuCC- -5'
14378 5' -60.4 NC_003521.1 + 202616 0.7 0.636616
Target:  5'- -cUGCGCCUCCUGCccgaccUCGaccgcgaGCACUGGGa -3'
miRNA:   3'- ccACGUGGAGGGCG------AGCg------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 227950 0.7 0.605083
Target:  5'- uGGUGUACCUgcgggaaggCCCguaccgcugcgucuGCUCGCGCACguGa -3'
miRNA:   3'- -CCACGUGGA---------GGG--------------CGAGCGCGUGguCc -5'
14378 5' -60.4 NC_003521.1 + 218361 0.7 0.646175
Target:  5'- --aGCGCCaCCCGCUCGCcaaGCgACgCAGGu -3'
miRNA:   3'- ccaCGUGGaGGGCGAGCG---CG-UG-GUCC- -5'
14378 5' -60.4 NC_003521.1 + 16387 0.7 0.636616
Target:  5'- --cGCACCUggaCCGCUCGCcCACCAc- -3'
miRNA:   3'- ccaCGUGGAg--GGCGAGCGcGUGGUcc -5'
14378 5' -60.4 NC_003521.1 + 130820 0.7 0.646175
Target:  5'- gGGUGCACauCUCCCGCcUGCuGgACCGGc -3'
miRNA:   3'- -CCACGUG--GAGGGCGaGCG-CgUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 85250 0.7 0.646175
Target:  5'- cGGcGCGCaaauaacuggCUaCCCGCUcCGCGCGCCGGc -3'
miRNA:   3'- -CCaCGUG----------GA-GGGCGA-GCGCGUGGUCc -5'
14378 5' -60.4 NC_003521.1 + 129980 0.7 0.655725
Target:  5'- cGUGCACCgUCgCUGC-CGCuGCGCCGGcGg -3'
miRNA:   3'- cCACGUGG-AG-GGCGaGCG-CGUGGUC-C- -5'
14378 5' -60.4 NC_003521.1 + 44047 0.7 0.617494
Target:  5'- cGUuUACCgcgCCCGCggUCGCGCcgGCCGGGg -3'
miRNA:   3'- cCAcGUGGa--GGGCG--AGCGCG--UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 2389 0.7 0.636616
Target:  5'- -cUGCGCCUCCUGCccgaccUCGaccgcgaGCACUGGGa -3'
miRNA:   3'- ccACGUGGAGGGCG------AGCg------CGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 211739 0.7 0.617494
Target:  5'- aGUGCGCCaCCaugaGCUCGaUGCccACCAGGa -3'
miRNA:   3'- cCACGUGGaGGg---CGAGC-GCG--UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 74942 0.7 0.655725
Target:  5'- uGGUGUACCcgccgCCCGagcaCGUGCACCGcuGGa -3'
miRNA:   3'- -CCACGUGGa----GGGCga--GCGCGUGGU--CC- -5'
14378 5' -60.4 NC_003521.1 + 100085 0.7 0.649996
Target:  5'- cGG-GCGCCUCgaCCGCcgacgaggacUCGCGCgggaugacguucgucACCAGGa -3'
miRNA:   3'- -CCaCGUGGAG--GGCG----------AGCGCG---------------UGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 110918 0.69 0.665258
Target:  5'- cGGUGCugUUCcgcacggugCCGUUgGUGCACUGGGu -3'
miRNA:   3'- -CCACGugGAG---------GGCGAgCGCGUGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 34572 0.69 0.684247
Target:  5'- gGGUGCACCaggCUgaCGC-CGgGCugCAGGc -3'
miRNA:   3'- -CCACGUGGa--GG--GCGaGCgCGugGUCC- -5'
14378 5' -60.4 NC_003521.1 + 87400 0.69 0.684247
Target:  5'- aGGUGaCGCCga-CGCUCaCGC-CCAGGg -3'
miRNA:   3'- -CCAC-GUGGaggGCGAGcGCGuGGUCC- -5'
14378 5' -60.4 NC_003521.1 + 165840 0.69 0.693689
Target:  5'- --cGCGCa-CCCGCUCGgGCGagcaCAGGa -3'
miRNA:   3'- ccaCGUGgaGGGCGAGCgCGUg---GUCC- -5'
14378 5' -60.4 NC_003521.1 + 204116 0.69 0.684247
Target:  5'- -cUGCGCCUCCaccuGCUCGgGCcaggcGCCGGa -3'
miRNA:   3'- ccACGUGGAGGg---CGAGCgCG-----UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 225878 0.69 0.689917
Target:  5'- cGGUGCuccaugcgcgucugGCgCUgCCGCUCGCGCucgaagcGCCGGu -3'
miRNA:   3'- -CCACG--------------UG-GAgGGCGAGCGCG-------UGGUCc -5'
14378 5' -60.4 NC_003521.1 + 72596 0.69 0.693689
Target:  5'- --gGCGgCUCCCGCUaGCGCACUg-- -3'
miRNA:   3'- ccaCGUgGAGGGCGAgCGCGUGGucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.