miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 224806 0.7 0.929568
Target:  5'- -gGACGCGCGugGcguaggGCGUC-UGCGGCu -3'
miRNA:   3'- caCUGCGCGUugC------UGUAGcACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 141893 0.7 0.929568
Target:  5'- uGUGAUGCGC-ACGGC--CGUGCGcgaGCAg -3'
miRNA:   3'- -CACUGCGCGuUGCUGuaGCACGC---UGU- -5'
14387 5' -53.4 NC_003521.1 + 239238 0.7 0.912559
Target:  5'- uGUGGCGCugcacggccgucaGCAGCGACGgcggGUGUGGCGc -3'
miRNA:   3'- -CACUGCG-------------CGUUGCUGUag--CACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 76062 0.7 0.913142
Target:  5'- -aGACGCuuGAUGACGgcgaUGUGCGGCAg -3'
miRNA:   3'- caCUGCGcgUUGCUGUa---GCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 88510 0.7 0.913142
Target:  5'- --cACGCGCAGCGACucgcagcCGUGCaGGCGc -3'
miRNA:   3'- cacUGCGCGUUGCUGua-----GCACG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 186757 0.7 0.929568
Target:  5'- cUGGgGCuCGGCGGCAUCGgcggagGCGGCGg -3'
miRNA:   3'- cACUgCGcGUUGCUGUAGCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 57376 0.7 0.929568
Target:  5'- cGUGACGCGCcAgGGCGUCGaucucGCGcCAc -3'
miRNA:   3'- -CACUGCGCGuUgCUGUAGCa----CGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 76349 0.7 0.934579
Target:  5'- gGUGACGgcUGCGGCGGCGgcagCG-GCGACc -3'
miRNA:   3'- -CACUGC--GCGUUGCUGUa---GCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 165588 0.7 0.934579
Target:  5'- -cGGCGUGCAugaagggcACGAUGUCGUgguugGCGGCGu -3'
miRNA:   3'- caCUGCGCGU--------UGCUGUAGCA-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 113348 0.7 0.929568
Target:  5'- gGUGACGCGCAucuCGGCGcuggCGgGCGuCAa -3'
miRNA:   3'- -CACUGCGCGUu--GCUGUa---GCaCGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 176292 0.7 0.929568
Target:  5'- -aGACGgGCGuCGGCGUCGUcGCG-CAa -3'
miRNA:   3'- caCUGCgCGUuGCUGUAGCA-CGCuGU- -5'
14387 5' -53.4 NC_003521.1 + 92768 0.7 0.929568
Target:  5'- -cGACGCGCGACaucucguACAUgG-GCGACAg -3'
miRNA:   3'- caCUGCGCGUUGc------UGUAgCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 192310 0.7 0.913142
Target:  5'- ---cCGCgGUAGCGGCGUCG-GCGGCAc -3'
miRNA:   3'- cacuGCG-CGUUGCUGUAGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 128462 0.7 0.907204
Target:  5'- -aGACGcCGCAGCcGCcgCGUGCGuACGg -3'
miRNA:   3'- caCUGC-GCGUUGcUGuaGCACGC-UGU- -5'
14387 5' -53.4 NC_003521.1 + 225846 0.7 0.924325
Target:  5'- -cGGCGCGCu-CGugGUgGUGCgGGCAc -3'
miRNA:   3'- caCUGCGCGuuGCugUAgCACG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 167673 0.7 0.928538
Target:  5'- aGUGACGUGCucgcgguugcgguGACGACGcUCGUggaggagGCGGCGg -3'
miRNA:   3'- -CACUGCGCG-------------UUGCUGU-AGCA-------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 135248 0.7 0.924325
Target:  5'- -cGGCG-GCGACGACA-CG-GCGGCGg -3'
miRNA:   3'- caCUGCgCGUUGCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 201543 0.69 0.948225
Target:  5'- -cGGCGC-CGGCGACGUgGcGCGGCu -3'
miRNA:   3'- caCUGCGcGUUGCUGUAgCaCGCUGu -5'
14387 5' -53.4 NC_003521.1 + 101721 0.69 0.945661
Target:  5'- -cGAUGCGCGGCGGgggcgagaUggggaaggccggcagGUCGUGCGGCGg -3'
miRNA:   3'- caCUGCGCGUUGCU--------G---------------UAGCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 36254 0.69 0.948225
Target:  5'- -cGGCGCGCGACGugGuggauUCGUG-GAUc -3'
miRNA:   3'- caCUGCGCGUUGCugU-----AGCACgCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.