miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1441 5' -57 NC_001335.1 + 47961 0.66 0.606984
Target:  5'- aGCACUGguccgcugucggcgACGguGCagucgacacCAGCGCA-GGACa -3'
miRNA:   3'- -CGUGGCa-------------UGCguCG---------GUCGCGUuCCUG- -5'
1441 5' -57 NC_001335.1 + 5929 0.66 0.602592
Target:  5'- uGUGCCGUggACGgugaaCAGCCAGgGCuugcucauGGACg -3'
miRNA:   3'- -CGUGGCA--UGC-----GUCGGUCgCGuu------CCUG- -5'
1441 5' -57 NC_001335.1 + 17959 0.66 0.59163
Target:  5'- cGCugCGaAC-CAGCUcgaccagauccaGGCGCAgaAGGACa -3'
miRNA:   3'- -CGugGCaUGcGUCGG------------UCGCGU--UCCUG- -5'
1441 5' -57 NC_001335.1 + 52200 0.66 0.59163
Target:  5'- aGCGCCGcggcACGCGGCUAGCaaaGCGuGcGAUa -3'
miRNA:   3'- -CGUGGCa---UGCGUCGGUCG---CGUuC-CUG- -5'
1441 5' -57 NC_001335.1 + 16261 0.66 0.580702
Target:  5'- gGCGCUG-GCGUAGUC-GCGCucggcauGGACg -3'
miRNA:   3'- -CGUGGCaUGCGUCGGuCGCGuu-----CCUG- -5'
1441 5' -57 NC_001335.1 + 26137 0.66 0.580702
Target:  5'- aGUACCuGUcuCGCGGCCAGaaccCGCGccucGGGGCc -3'
miRNA:   3'- -CGUGG-CAu-GCGUCGGUC----GCGU----UCCUG- -5'
1441 5' -57 NC_001335.1 + 22592 0.66 0.580702
Target:  5'- aCGCUGgcgGCGUGGCCGGCGgugacgacuuCGAGcGACu -3'
miRNA:   3'- cGUGGCa--UGCGUCGGUCGC----------GUUC-CUG- -5'
1441 5' -57 NC_001335.1 + 23180 0.66 0.580702
Target:  5'- aCGCCGUcguccgaccAUGUGGCCAGCaCGGGGcCg -3'
miRNA:   3'- cGUGGCA---------UGCGUCGGUCGcGUUCCuG- -5'
1441 5' -57 NC_001335.1 + 36660 0.66 0.569816
Target:  5'- aGCugaCGUACuCGaCCAGCGCcGGGGCg -3'
miRNA:   3'- -CGug-GCAUGcGUcGGUCGCGuUCCUG- -5'
1441 5' -57 NC_001335.1 + 48480 0.66 0.558982
Target:  5'- uGCACCGcACGCAc----CGCGAGGGCa -3'
miRNA:   3'- -CGUGGCaUGCGUcggucGCGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 33053 0.66 0.558982
Target:  5'- uCGCuCGUACGgAGCCuGCGgGAagcuGGACu -3'
miRNA:   3'- cGUG-GCAUGCgUCGGuCGCgUU----CCUG- -5'
1441 5' -57 NC_001335.1 + 20606 0.67 0.548206
Target:  5'- cGCGCCGaGCGCGGCgAGCugGCuguugaugaacGAGGuCa -3'
miRNA:   3'- -CGUGGCaUGCGUCGgUCG--CG-----------UUCCuG- -5'
1441 5' -57 NC_001335.1 + 373 0.67 0.537496
Target:  5'- cGCGCCaGUGCGCGGCCcuauaGAGGGg -3'
miRNA:   3'- -CGUGG-CAUGCGUCGGucgcgUUCCUg -5'
1441 5' -57 NC_001335.1 + 38068 0.67 0.516302
Target:  5'- aGCugUGUGgGCuGCCGaCGguGGGGCu -3'
miRNA:   3'- -CGugGCAUgCGuCGGUcGCguUCCUG- -5'
1441 5' -57 NC_001335.1 + 51848 0.67 0.495452
Target:  5'- gGCACguaGUGaGCAGCCuauGCGCGgcacgggcugccGGGACu -3'
miRNA:   3'- -CGUGg--CAUgCGUCGGu--CGCGU------------UCCUG- -5'
1441 5' -57 NC_001335.1 + 16318 0.67 0.495452
Target:  5'- aGCGCCGgcuccgaACGCAGaCAGCaGCGAcGGCa -3'
miRNA:   3'- -CGUGGCa------UGCGUCgGUCG-CGUUcCUG- -5'
1441 5' -57 NC_001335.1 + 49341 0.67 0.49442
Target:  5'- cGCAgCGUugGCAGUCccacGCGCuguaaccAGGGAUc -3'
miRNA:   3'- -CGUgGCAugCGUCGGu---CGCG-------UUCCUG- -5'
1441 5' -57 NC_001335.1 + 20255 0.68 0.485171
Target:  5'- -gGCCG-GCGaCGGCCAG-GuCGAGGGCg -3'
miRNA:   3'- cgUGGCaUGC-GUCGGUCgC-GUUCCUG- -5'
1441 5' -57 NC_001335.1 + 16985 0.68 0.481088
Target:  5'- aGCGCCGUGacgaugggagcgaGCuguguGcCCAGCGUcccGAGGACg -3'
miRNA:   3'- -CGUGGCAUg------------CGu----C-GGUCGCG---UUCCUG- -5'
1441 5' -57 NC_001335.1 + 17221 0.68 0.474993
Target:  5'- -gGCCGagggcCGUcGCCAGCGCcGGGAUg -3'
miRNA:   3'- cgUGGCau---GCGuCGGUCGCGuUCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.