miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1441 5' -57 NC_001335.1 + 52200 0.66 0.59163
Target:  5'- aGCGCCGcggcACGCGGCUAGCaaaGCGuGcGAUa -3'
miRNA:   3'- -CGUGGCa---UGCGUCGGUCG---CGUuC-CUG- -5'
1441 5' -57 NC_001335.1 + 52080 0.75 0.181697
Target:  5'- cGCAUCGU-CGCAuGUCAGCGCGGguauGGGCg -3'
miRNA:   3'- -CGUGGCAuGCGU-CGGUCGCGUU----CCUG- -5'
1441 5' -57 NC_001335.1 + 51848 0.67 0.495452
Target:  5'- gGCACguaGUGaGCAGCCuauGCGCGgcacgggcugccGGGACu -3'
miRNA:   3'- -CGUGg--CAUgCGUCGGu--CGCGU------------UCCUG- -5'
1441 5' -57 NC_001335.1 + 51750 0.68 0.473981
Target:  5'- cGCGCCaUAucUGCAGCUAGgGCAccaauuugcgauuAGGGCu -3'
miRNA:   3'- -CGUGGcAU--GCGUCGGUCgCGU-------------UCCUG- -5'
1441 5' -57 NC_001335.1 + 49341 0.67 0.49442
Target:  5'- cGCAgCGUugGCAGUCccacGCGCuguaaccAGGGAUc -3'
miRNA:   3'- -CGUgGCAugCGUCGGu---CGCG-------UUCCUG- -5'
1441 5' -57 NC_001335.1 + 48480 0.66 0.558982
Target:  5'- uGCACCGcACGCAc----CGCGAGGGCa -3'
miRNA:   3'- -CGUGGCaUGCGUcggucGCGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 47961 0.66 0.606984
Target:  5'- aGCACUGguccgcugucggcgACGguGCagucgacacCAGCGCA-GGACa -3'
miRNA:   3'- -CGUGGCa-------------UGCguCG---------GUCGCGUuCCUG- -5'
1441 5' -57 NC_001335.1 + 47129 0.69 0.398699
Target:  5'- cGCACCGUAacCGCaAGCgAGagaugaagcgccccgGCAAGGGCa -3'
miRNA:   3'- -CGUGGCAU--GCG-UCGgUCg--------------CGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 46353 0.69 0.406992
Target:  5'- uGCGCCugGCGCagAGCCAGCGCAGc--- -3'
miRNA:   3'- -CGUGGcaUGCG--UCGGUCGCGUUccug -5'
1441 5' -57 NC_001335.1 + 41402 0.7 0.370976
Target:  5'- aCGCCGacuucccggUGcCGgGGCCGGCGCAgaccAGGACu -3'
miRNA:   3'- cGUGGC---------AU-GCgUCGGUCGCGU----UCCUG- -5'
1441 5' -57 NC_001335.1 + 38068 0.67 0.516302
Target:  5'- aGCugUGUGgGCuGCCGaCGguGGGGCu -3'
miRNA:   3'- -CGugGCAUgCGuCGGUcGCguUCCUG- -5'
1441 5' -57 NC_001335.1 + 36660 0.66 0.569816
Target:  5'- aGCugaCGUACuCGaCCAGCGCcGGGGCg -3'
miRNA:   3'- -CGug-GCAUGcGUcGGUCGCGuUCCUG- -5'
1441 5' -57 NC_001335.1 + 34273 0.69 0.416333
Target:  5'- gGCGgUGUGCGcCGGUCGGCGC--GGAUg -3'
miRNA:   3'- -CGUgGCAUGC-GUCGGUCGCGuuCCUG- -5'
1441 5' -57 NC_001335.1 + 34037 0.7 0.352958
Target:  5'- -aGCCGUACGCaacggagAGCCGGgGauguGGGACu -3'
miRNA:   3'- cgUGGCAUGCG-------UCGGUCgCgu--UCCUG- -5'
1441 5' -57 NC_001335.1 + 33053 0.66 0.558982
Target:  5'- uCGCuCGUACGgAGCCuGCGgGAagcuGGACu -3'
miRNA:   3'- cGUG-GCAUGCgUCGGuCGCgUU----CCUG- -5'
1441 5' -57 NC_001335.1 + 26569 0.68 0.445123
Target:  5'- cGCGCUccACGCGGaUCAGC-CGGGGACc -3'
miRNA:   3'- -CGUGGcaUGCGUC-GGUCGcGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 26137 0.66 0.580702
Target:  5'- aGUACCuGUcuCGCGGCCAGaaccCGCGccucGGGGCc -3'
miRNA:   3'- -CGUGG-CAu-GCGUCGGUC----GCGU----UCCUG- -5'
1441 5' -57 NC_001335.1 + 25732 0.68 0.435401
Target:  5'- aGCAUCGaaaGUAGCCAGauCAGGGAUg -3'
miRNA:   3'- -CGUGGCaugCGUCGGUCgcGUUCCUG- -5'
1441 5' -57 NC_001335.1 + 24714 0.71 0.321167
Target:  5'- uGCGCCGUgGCGCuuCCcGCGUggGGAa -3'
miRNA:   3'- -CGUGGCA-UGCGucGGuCGCGuuCCUg -5'
1441 5' -57 NC_001335.1 + 23180 0.66 0.580702
Target:  5'- aCGCCGUcguccgaccAUGUGGCCAGCaCGGGGcCg -3'
miRNA:   3'- cGUGGCA---------UGCGUCGGUCGcGUUCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.