Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14421 | 3' | -56.8 | NC_003521.1 | + | 105304 | 0.68 | 0.875453 |
Target: 5'- uGGCGGGCguGGGgacgCcgCGCGaCGUCGCCg -3' miRNA: 3'- gUUGCUCG--UCCa---Ga-GCGC-GUAGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 14386 | 0.68 | 0.853565 |
Target: 5'- gGACGAGCuggcgcgcuacGGcGUgUCGCGCucggagAUCGCCUa -3' miRNA: 3'- gUUGCUCG-----------UC-CAgAGCGCG------UAGCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 164546 | 0.7 | 0.769389 |
Target: 5'- uCGACGAccGCgAGGUCUCGCagGCGgccgugCGCCUc -3' miRNA: 3'- -GUUGCU--CG-UCCAGAGCG--CGUa-----GCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 185403 | 0.74 | 0.574896 |
Target: 5'- aCGACGuGgAGGUCUCGUGCGUCaaCCUc -3' miRNA: 3'- -GUUGCuCgUCCAGAGCGCGUAGc-GGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 18972 | 0.67 | 0.913617 |
Target: 5'- aCGAgGAGgGGGUCgaggaCGCGCcgCGCg- -3' miRNA: 3'- -GUUgCUCgUCCAGa----GCGCGuaGCGga -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 106309 | 0.68 | 0.875453 |
Target: 5'- aGGCG-GCGGccg-UGCGCAUCGCCUg -3' miRNA: 3'- gUUGCuCGUCcagaGCGCGUAGCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 86661 | 0.69 | 0.838021 |
Target: 5'- cCGACGA-CAGGUUgaggaucaGCGCGUCGUCg -3' miRNA: 3'- -GUUGCUcGUCCAGag------CGCGUAGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 208286 | 0.74 | 0.555365 |
Target: 5'- aCGACGAGCGGGUCuaUCGCGaucCGCUc -3' miRNA: 3'- -GUUGCUCGUCCAG--AGCGCguaGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 36713 | 0.68 | 0.875453 |
Target: 5'- --cCGAGCAGGUggagGCGCAguggCGCCa -3' miRNA: 3'- guuGCUCGUCCAgag-CGCGUa---GCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 53399 | 0.76 | 0.470502 |
Target: 5'- gCGGCGAGCAGGggaUgGCGCGUCGgCa -3' miRNA: 3'- -GUUGCUCGUCCag-AgCGCGUAGCgGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 123230 | 0.69 | 0.845884 |
Target: 5'- gCGGCGguAGguGGUCguaGCGCcgCGCCc -3' miRNA: 3'- -GUUGC--UCguCCAGag-CGCGuaGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 138630 | 0.68 | 0.875453 |
Target: 5'- gGAC-AGCGGGUCg-GCGaaaGUCGCCa -3' miRNA: 3'- gUUGcUCGUCCAGagCGCg--UAGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 176377 | 0.7 | 0.796208 |
Target: 5'- uCAGCGuGCggAGGUaCUCGCGCGucUCGuCCUc -3' miRNA: 3'- -GUUGCuCG--UCCA-GAGCGCGU--AGC-GGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 236140 | 0.7 | 0.778455 |
Target: 5'- gGACGGGgGGGaCcgCGCGaCGUCGCCg -3' miRNA: 3'- gUUGCUCgUCCaGa-GCGC-GUAGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 95063 | 0.71 | 0.722506 |
Target: 5'- ---aGAGCAGGUCgcucagguagUCGCGCAggggcucgggCGCCUu -3' miRNA: 3'- guugCUCGUCCAG----------AGCGCGUa---------GCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 84824 | 0.73 | 0.614365 |
Target: 5'- -uACGGGCAG--CUCGCGCAgCGCCUc -3' miRNA: 3'- guUGCUCGUCcaGAGCGCGUaGCGGA- -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 168034 | 0.66 | 0.929725 |
Target: 5'- aGGCGuGCGGGUCUUGgaGCugugcCGCCg -3' miRNA: 3'- gUUGCuCGUCCAGAGCg-CGua---GCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 28589 | 0.67 | 0.913617 |
Target: 5'- gGACG-GCGGG-CUgcUGCGCAcCGCCa -3' miRNA: 3'- gUUGCuCGUCCaGA--GCGCGUaGCGGa -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 44245 | 0.67 | 0.9078 |
Target: 5'- uGGCGAGCAGG--UCGgGCGUCGg-- -3' miRNA: 3'- gUUGCUCGUCCagAGCgCGUAGCgga -5' |
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14421 | 3' | -56.8 | NC_003521.1 | + | 153082 | 0.67 | 0.895505 |
Target: 5'- --cCGcAGCuGGUCUCGgGCuUCGUCUg -3' miRNA: 3'- guuGC-UCGuCCAGAGCgCGuAGCGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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