miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 5' -53.9 NC_003521.1 + 120747 0.66 0.985485
Target:  5'- gCACCAg-GUgGCCGCCuggAUGCCGGc -3'
miRNA:   3'- -GUGGUagUAgUGGUGGuagUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 79737 0.66 0.985485
Target:  5'- cCGCCGacacUCGU-ACCGaCAUCAgCGCCGGg -3'
miRNA:   3'- -GUGGU----AGUAgUGGUgGUAGU-GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 128020 0.66 0.985485
Target:  5'- uCACCGUgCG-CGgCACC-UCGCGCCGc -3'
miRNA:   3'- -GUGGUA-GUaGUgGUGGuAGUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 41896 0.66 0.985485
Target:  5'- uGCC-UCAUCAaccCCAUCcUCACGCCc- -3'
miRNA:   3'- gUGGuAGUAGU---GGUGGuAGUGCGGcc -5'
14422 5' -53.9 NC_003521.1 + 143737 0.66 0.985485
Target:  5'- aCGCCAUCAaguuccUCaACCACCG--AUGCCGc -3'
miRNA:   3'- -GUGGUAGU------AG-UGGUGGUagUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 81423 0.66 0.985485
Target:  5'- uGCCAg-AagACCACCAgUC-CGCCGGu -3'
miRNA:   3'- gUGGUagUagUGGUGGU-AGuGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 121942 0.66 0.98374
Target:  5'- uCACCGUCAcguUCugCACCuccUCGC-CCGu -3'
miRNA:   3'- -GUGGUAGU---AGugGUGGu--AGUGcGGCc -5'
14422 5' -53.9 NC_003521.1 + 197728 0.66 0.985485
Target:  5'- cCACCAcaaCAUCcCCGCUAgcUCcgguggACGCCGGg -3'
miRNA:   3'- -GUGGUa--GUAGuGGUGGU--AG------UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 93946 0.66 0.991073
Target:  5'- cCGCCGUCGUCuggcuuCCuCC-UCugGgCGGg -3'
miRNA:   3'- -GUGGUAGUAGu-----GGuGGuAGugCgGCC- -5'
14422 5' -53.9 NC_003521.1 + 177963 0.66 0.98374
Target:  5'- aCGCCGUCAgcuuaucgugUACCACC----UGCCGGg -3'
miRNA:   3'- -GUGGUAGUa---------GUGGUGGuaguGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 70700 0.66 0.985485
Target:  5'- gCGCCGcaagcugCGUCGgCGCCu--GCGCCGGa -3'
miRNA:   3'- -GUGGUa------GUAGUgGUGGuagUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 114193 0.66 0.985485
Target:  5'- gCugCG-CGUCACCcgACCGUCcauCGCCGu -3'
miRNA:   3'- -GugGUaGUAGUGG--UGGUAGu--GCGGCc -5'
14422 5' -53.9 NC_003521.1 + 57965 0.66 0.98374
Target:  5'- uCGCUAUCAUCAUCGuCCucgcugcuguuGUCAgCGCCGc -3'
miRNA:   3'- -GUGGUAGUAGUGGU-GG-----------UAGU-GCGGCc -5'
14422 5' -53.9 NC_003521.1 + 126475 0.66 0.985485
Target:  5'- gGCCAgCGUCAUgACCGagugcagCACGuuGGg -3'
miRNA:   3'- gUGGUaGUAGUGgUGGUa------GUGCggCC- -5'
14422 5' -53.9 NC_003521.1 + 3647 0.66 0.985317
Target:  5'- uGCCA-CGgcCGCCGCCGUCugccucgGCGgCCGGg -3'
miRNA:   3'- gUGGUaGUa-GUGGUGGUAG-------UGC-GGCC- -5'
14422 5' -53.9 NC_003521.1 + 83926 0.66 0.985485
Target:  5'- gGCC--CGUCGCCccccguGCCAUCGggcagcggcCGCCGGa -3'
miRNA:   3'- gUGGuaGUAGUGG------UGGUAGU---------GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 194520 0.66 0.98374
Target:  5'- gGCCGUCAuagauUCGCUGCgAUCgaacugucugccGCGUCGGg -3'
miRNA:   3'- gUGGUAGU-----AGUGGUGgUAG------------UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 225514 0.66 0.98374
Target:  5'- uCACCcgC-UCGgCGCCGUCGCGCg-- -3'
miRNA:   3'- -GUGGuaGuAGUgGUGGUAGUGCGgcc -5'
14422 5' -53.9 NC_003521.1 + 26636 0.66 0.98374
Target:  5'- aCGCCAUUGUgACCGCUGaaGCGUCGa -3'
miRNA:   3'- -GUGGUAGUAgUGGUGGUagUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 157226 0.66 0.985485
Target:  5'- cCGCCGUCAUaCGCCGCCGcgAgGuCCGa -3'
miRNA:   3'- -GUGGUAGUA-GUGGUGGUagUgC-GGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.