miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 5' -53.9 NC_003521.1 + 75667 1.1 0.007289
Target:  5'- cCACCAUCAUCACCACCAUCACGCCGGc -3'
miRNA:   3'- -GUGGUAGUAGUGGUGGUAGUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 214792 0.89 0.142392
Target:  5'- cCGCCGUCcucuUCACCGCCGUCggGCGCCGGg -3'
miRNA:   3'- -GUGGUAGu---AGUGGUGGUAG--UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 31268 0.83 0.32095
Target:  5'- cCGCCAcCGUCGCCGCCAcCcCGCCGGg -3'
miRNA:   3'- -GUGGUaGUAGUGGUGGUaGuGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 151785 0.82 0.335476
Target:  5'- gCACCAUgAgcggcgaggaacUCACCGCCGUgGCGCCGGu -3'
miRNA:   3'- -GUGGUAgU------------AGUGGUGGUAgUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 44095 0.81 0.390024
Target:  5'- gCGCCGcCGcCACCACCGUCGCcGCCGGu -3'
miRNA:   3'- -GUGGUaGUaGUGGUGGUAGUG-CGGCC- -5'
14422 5' -53.9 NC_003521.1 + 162280 0.81 0.390024
Target:  5'- -cCCAgCcUCugCACCGUCACGCCGGg -3'
miRNA:   3'- guGGUaGuAGugGUGGUAGUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 47937 0.8 0.415112
Target:  5'- uGCUgAUCGUCaACCGCCGUCGCGCuCGGa -3'
miRNA:   3'- gUGG-UAGUAG-UGGUGGUAGUGCG-GCC- -5'
14422 5' -53.9 NC_003521.1 + 103285 0.8 0.450055
Target:  5'- gCGCCGucUCGUCguagGCCACCA-CGCGCCGGu -3'
miRNA:   3'- -GUGGU--AGUAG----UGGUGGUaGUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 142420 0.79 0.505327
Target:  5'- gGCCAaCGUCACCACCA--GCGUCGGc -3'
miRNA:   3'- gUGGUaGUAGUGGUGGUagUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 135414 0.79 0.505327
Target:  5'- -cCCAUCccCAUCGCCGUCACGCgCGGg -3'
miRNA:   3'- guGGUAGuaGUGGUGGUAGUGCG-GCC- -5'
14422 5' -53.9 NC_003521.1 + 208181 0.78 0.543744
Target:  5'- cCGCCGUCGUCugCGCCGcCGCGaugaCGGa -3'
miRNA:   3'- -GUGGUAGUAGugGUGGUaGUGCg---GCC- -5'
14422 5' -53.9 NC_003521.1 + 90276 0.76 0.612933
Target:  5'- cCACCAcCcgCACCACCA-C-CGCCGGa -3'
miRNA:   3'- -GUGGUaGuaGUGGUGGUaGuGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 180533 0.76 0.622925
Target:  5'- -cUCAUCGUCACCACCGUCuccGCGgcguaCCGGg -3'
miRNA:   3'- guGGUAGUAGUGGUGGUAG---UGC-----GGCC- -5'
14422 5' -53.9 NC_003521.1 + 117259 0.76 0.642921
Target:  5'- cCGCCAUCccgcCACCGCCGUCGucggccguggUGCCGGc -3'
miRNA:   3'- -GUGGUAGua--GUGGUGGUAGU----------GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 115103 0.76 0.642921
Target:  5'- gCGCCGUCGcCGCCcCCGUCGugacCGCCGGc -3'
miRNA:   3'- -GUGGUAGUaGUGGuGGUAGU----GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 121036 0.76 0.652911
Target:  5'- gCGCCGaccUCGUCGCCGCU---GCGCCGGu -3'
miRNA:   3'- -GUGGU---AGUAGUGGUGGuagUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 111266 0.75 0.682755
Target:  5'- aGCCAUCGUCGggcCCGCCGUgccaGCGCCGc -3'
miRNA:   3'- gUGGUAGUAGU---GGUGGUAg---UGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 165196 0.75 0.692633
Target:  5'- uGCCGUCGUCAUCgucggcgacugaGCCGUgGCGCCGc -3'
miRNA:   3'- gUGGUAGUAGUGG------------UGGUAgUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 134998 0.75 0.692633
Target:  5'- uCAUCAUCcgCcCCACCAUCuggcUGCCGGg -3'
miRNA:   3'- -GUGGUAGuaGuGGUGGUAGu---GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 164495 0.75 0.692633
Target:  5'- uCACCGUCgccuccgcagcuGUCGCCGCCAccucCGCuGCCGGa -3'
miRNA:   3'- -GUGGUAG------------UAGUGGUGGUa---GUG-CGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.