miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 5' -53.9 NC_003521.1 + 2711 0.7 0.925871
Target:  5'- aCGCCAcucgugcgggagcgcCGUCACCGCCucgCugGCUGGc -3'
miRNA:   3'- -GUGGUa--------------GUAGUGGUGGua-GugCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 3647 0.66 0.985317
Target:  5'- uGCCA-CGgcCGCCGCCGUCugccucgGCGgCCGGg -3'
miRNA:   3'- gUGGUaGUa-GUGGUGGUAG-------UGC-GGCC- -5'
14422 5' -53.9 NC_003521.1 + 4330 0.7 0.925345
Target:  5'- gACCGUCcaugccuggCGCCACCG-C-CGCCGGc -3'
miRNA:   3'- gUGGUAGua-------GUGGUGGUaGuGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 4512 0.67 0.972557
Target:  5'- uCACCAgcuucucgauguUCAUCACCG-CAUCGCcCCGa -3'
miRNA:   3'- -GUGGU------------AGUAGUGGUgGUAGUGcGGCc -5'
14422 5' -53.9 NC_003521.1 + 4656 0.66 0.987083
Target:  5'- cCACC--CAUCGuCCGCUagGUCcCGCCGGc -3'
miRNA:   3'- -GUGGuaGUAGU-GGUGG--UAGuGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 5558 0.66 0.989869
Target:  5'- cCGCCAUCGUUguuCCGuCCGUCGCugucaucaccgGCCGu -3'
miRNA:   3'- -GUGGUAGUAGu--GGU-GGUAGUG-----------CGGCc -5'
14422 5' -53.9 NC_003521.1 + 5656 0.66 0.985485
Target:  5'- cCACCAUgA-CGCgaCGCCaAUCGCGCuCGGa -3'
miRNA:   3'- -GUGGUAgUaGUG--GUGG-UAGUGCG-GCC- -5'
14422 5' -53.9 NC_003521.1 + 6879 0.69 0.930497
Target:  5'- -uCCGUCGUCGucgugguuauccUCGCCGUCGCGCaagGGg -3'
miRNA:   3'- guGGUAGUAGU------------GGUGGUAGUGCGg--CC- -5'
14422 5' -53.9 NC_003521.1 + 7945 0.66 0.988542
Target:  5'- aGCuCAUCcuccagAUCGCCGCgguGUCGCGgCCGGg -3'
miRNA:   3'- gUG-GUAG------UAGUGGUGg--UAGUGC-GGCC- -5'
14422 5' -53.9 NC_003521.1 + 11194 0.69 0.948832
Target:  5'- gCACCuGUCuUCAgaGCCGUCGCGCCu- -3'
miRNA:   3'- -GUGG-UAGuAGUggUGGUAGUGCGGcc -5'
14422 5' -53.9 NC_003521.1 + 11539 0.71 0.876034
Target:  5'- gCGCCAguccUAUCGCUacgccuccggcGCCGUCguGCGCCGGa -3'
miRNA:   3'- -GUGGUa---GUAGUGG-----------UGGUAG--UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 13869 0.66 0.991073
Target:  5'- uCugCGggCggCGCCGCCAUgGauuuCGCCGGg -3'
miRNA:   3'- -GugGUa-GuaGUGGUGGUAgU----GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 14170 0.66 0.991073
Target:  5'- gAUCAUCGUCAgCGCCAagaAgGCCGc -3'
miRNA:   3'- gUGGUAGUAGUgGUGGUag-UgCGGCc -5'
14422 5' -53.9 NC_003521.1 + 14704 0.66 0.98374
Target:  5'- gGgCAUCcgCGCCaACCugugCACGCCGu -3'
miRNA:   3'- gUgGUAGuaGUGG-UGGua--GUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 14970 0.7 0.902465
Target:  5'- gCACCugugcCcgCACCACCAcgagCGCGCCGu -3'
miRNA:   3'- -GUGGua---GuaGUGGUGGUa---GUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 16922 0.73 0.787368
Target:  5'- uCACCGuaUCAUCACCaggaacgaccGCCGUUAcCGUCGGg -3'
miRNA:   3'- -GUGGU--AGUAGUGG----------UGGUAGU-GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 17334 0.66 0.991073
Target:  5'- uCGCCgAUCcgcccCACCucccggGCCGUgACGCCGGc -3'
miRNA:   3'- -GUGG-UAGua---GUGG------UGGUAgUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 17423 0.66 0.991073
Target:  5'- gCGCCGggg-CGCCACaCGgccCGCGUCGGg -3'
miRNA:   3'- -GUGGUaguaGUGGUG-GUa--GUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 17486 0.72 0.83837
Target:  5'- gCACCGguagCggCGCCGCCgGUCACGgCGGu -3'
miRNA:   3'- -GUGGUa---GuaGUGGUGG-UAGUGCgGCC- -5'
14422 5' -53.9 NC_003521.1 + 18009 0.66 0.98374
Target:  5'- aCGCCGUUuucCACCACCGagcCGCGCUa- -3'
miRNA:   3'- -GUGGUAGua-GUGGUGGUa--GUGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.