miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 5' -53.9 NC_003521.1 + 156062 0.73 0.813576
Target:  5'- uGCCAacaaCGUCGCCGCCGcCGCGCCc- -3'
miRNA:   3'- gUGGUa---GUAGUGGUGGUaGUGCGGcc -5'
14422 5' -53.9 NC_003521.1 + 70520 0.74 0.731583
Target:  5'- aCACCGaCGUgACCGCC-UCGCGCuCGGc -3'
miRNA:   3'- -GUGGUaGUAgUGGUGGuAGUGCG-GCC- -5'
14422 5' -53.9 NC_003521.1 + 226826 0.74 0.731583
Target:  5'- gCGCCAUgGgguccUCGcCCGCCGcCGCGCCGGg -3'
miRNA:   3'- -GUGGUAgU-----AGU-GGUGGUaGUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 36816 0.74 0.731583
Target:  5'- gGCCGUgAUCACgCGCCA-CGgGCCGGc -3'
miRNA:   3'- gUGGUAgUAGUG-GUGGUaGUgCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 233166 0.73 0.778355
Target:  5'- cCGCUGUCcgCGCCGCCGUgGCgGCCGc -3'
miRNA:   3'- -GUGGUAGuaGUGGUGGUAgUG-CGGCc -5'
14422 5' -53.9 NC_003521.1 + 16922 0.73 0.787368
Target:  5'- uCACCGuaUCAUCACCaggaacgaccGCCGUUAcCGUCGGg -3'
miRNA:   3'- -GUGGU--AGUAGUGG----------UGGUAGU-GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 220880 0.73 0.787368
Target:  5'- gGCCAcCAUCACCACgAUCuCGCCc- -3'
miRNA:   3'- gUGGUaGUAGUGGUGgUAGuGCGGcc -5'
14422 5' -53.9 NC_003521.1 + 192290 0.73 0.796248
Target:  5'- aCGCCGuUCGUCGgCACCGUCcgcgguagcgGCGUCGGc -3'
miRNA:   3'- -GUGGU-AGUAGUgGUGGUAG----------UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 105581 0.73 0.804987
Target:  5'- cCGCCguGUCGUCGCCGCCGccggCGCaGCCGc -3'
miRNA:   3'- -GUGG--UAGUAGUGGUGGUa---GUG-CGGCc -5'
14422 5' -53.9 NC_003521.1 + 171739 0.74 0.721947
Target:  5'- gUACCAcCA-CGCCACCAUCAUGacaCGGg -3'
miRNA:   3'- -GUGGUaGUaGUGGUGGUAGUGCg--GCC- -5'
14422 5' -53.9 NC_003521.1 + 234310 0.75 0.712238
Target:  5'- cCGCCcUCGUCACCggugagccucuGCCGUCACcgccuccgcuGCCGGa -3'
miRNA:   3'- -GUGGuAGUAGUGG-----------UGGUAGUG----------CGGCC- -5'
14422 5' -53.9 NC_003521.1 + 164495 0.75 0.692633
Target:  5'- uCACCGUCgccuccgcagcuGUCGCCGCCAccucCGCuGCCGGa -3'
miRNA:   3'- -GUGGUAG------------UAGUGGUGGUa---GUG-CGGCC- -5'
14422 5' -53.9 NC_003521.1 + 214792 0.89 0.142392
Target:  5'- cCGCCGUCcucuUCACCGCCGUCggGCGCCGGg -3'
miRNA:   3'- -GUGGUAGu---AGUGGUGGUAG--UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 162280 0.81 0.390024
Target:  5'- -cCCAgCcUCugCACCGUCACGCCGGg -3'
miRNA:   3'- guGGUaGuAGugGUGGUAGUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 103285 0.8 0.450055
Target:  5'- gCGCCGucUCGUCguagGCCACCA-CGCGCCGGu -3'
miRNA:   3'- -GUGGU--AGUAG----UGGUGGUaGUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 142420 0.79 0.505327
Target:  5'- gGCCAaCGUCACCACCA--GCGUCGGc -3'
miRNA:   3'- gUGGUaGUAGUGGUGGUagUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 180533 0.76 0.622925
Target:  5'- -cUCAUCGUCACCACCGUCuccGCGgcguaCCGGg -3'
miRNA:   3'- guGGUAGUAGUGGUGGUAG---UGC-----GGCC- -5'
14422 5' -53.9 NC_003521.1 + 115103 0.76 0.642921
Target:  5'- gCGCCGUCGcCGCCcCCGUCGugacCGCCGGc -3'
miRNA:   3'- -GUGGUAGUaGUGGuGGUAGU----GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 117259 0.76 0.642921
Target:  5'- cCGCCAUCccgcCACCGCCGUCGucggccguggUGCCGGc -3'
miRNA:   3'- -GUGGUAGua--GUGGUGGUAGU----------GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 121036 0.76 0.652911
Target:  5'- gCGCCGaccUCGUCGCCGCU---GCGCCGGu -3'
miRNA:   3'- -GUGGU---AGUAGUGGUGGuagUGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.