miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14437 3' -56.4 NC_003521.1 + 72030 0.66 0.943883
Target:  5'- cGCgugGCCu-GCACCAGGUCcUGGUgCAg -3'
miRNA:   3'- -UGa--UGGucCGUGGUCUAGaACCGgGU- -5'
14437 3' -56.4 NC_003521.1 + 222703 0.66 0.943883
Target:  5'- uGCgGCCGGGCgugcggaucACCAGGUUgaGGCCg- -3'
miRNA:   3'- -UGaUGGUCCG---------UGGUCUAGaaCCGGgu -5'
14437 3' -56.4 NC_003521.1 + 105915 0.66 0.943883
Target:  5'- -aUGCCGGGCGCCuucauggacgAGAUCaucggcGGCaCCAa -3'
miRNA:   3'- ugAUGGUCCGUGG----------UCUAGaa----CCG-GGU- -5'
14437 3' -56.4 NC_003521.1 + 74180 0.66 0.939354
Target:  5'- gACUgcGCCGcGGCGcCCGGcgCgcGGCCCGa -3'
miRNA:   3'- -UGA--UGGU-CCGU-GGUCuaGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 79220 0.66 0.939354
Target:  5'- gUUGCCcgaGGGCACCAGAU----GCCCGc -3'
miRNA:   3'- uGAUGG---UCCGUGGUCUAgaacCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 6400 0.66 0.939354
Target:  5'- aGCUACCGcGGCGgcgaCGGGUCUUGccGCCUc -3'
miRNA:   3'- -UGAUGGU-CCGUg---GUCUAGAAC--CGGGu -5'
14437 3' -56.4 NC_003521.1 + 90081 0.66 0.939354
Target:  5'- aGCaguCCGGGCAgccggcCCAGGaCgUGGCCCAc -3'
miRNA:   3'- -UGau-GGUCCGU------GGUCUaGaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 16500 0.66 0.939354
Target:  5'- cGCUACgagcaCGGGCugCGGcgCUcGGCUCGg -3'
miRNA:   3'- -UGAUG-----GUCCGugGUCuaGAaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 155405 0.66 0.934596
Target:  5'- gGCgggggGCUGGGCACCGGAggccugCUgccGGCCa- -3'
miRNA:   3'- -UGa----UGGUCCGUGGUCUa-----GAa--CCGGgu -5'
14437 3' -56.4 NC_003521.1 + 165801 0.66 0.934596
Target:  5'- cGCUGCCGucGCAgUagGGGUCcUGGCCCAc -3'
miRNA:   3'- -UGAUGGUc-CGUgG--UCUAGaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 133493 0.66 0.929608
Target:  5'- --cACCuGGCGCCGcugCUgcggGGCCCAa -3'
miRNA:   3'- ugaUGGuCCGUGGUcuaGAa---CCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 181074 0.66 0.929608
Target:  5'- aGCUGCU---CACCAGGUCc-GGCCCGa -3'
miRNA:   3'- -UGAUGGuccGUGGUCUAGaaCCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 186294 0.66 0.929096
Target:  5'- aGCcGCCGGGCcCCagcggcgccgugcAGAUCcUGGUCCAc -3'
miRNA:   3'- -UGaUGGUCCGuGG-------------UCUAGaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 25939 0.66 0.92439
Target:  5'- uGCUugCAGGgGCCAGgGUCUUGaGUuuGg -3'
miRNA:   3'- -UGAugGUCCgUGGUC-UAGAAC-CGggU- -5'
14437 3' -56.4 NC_003521.1 + 60986 0.66 0.92439
Target:  5'- --gACCAGGUgacgcucuACCAGAaCUUGGUCUc -3'
miRNA:   3'- ugaUGGUCCG--------UGGUCUaGAACCGGGu -5'
14437 3' -56.4 NC_003521.1 + 126691 0.67 0.907355
Target:  5'- cACcGCCAGGCaguacucgACCAuGAUCUUgGGCgCCGu -3'
miRNA:   3'- -UGaUGGUCCG--------UGGU-CUAGAA-CCG-GGU- -5'
14437 3' -56.4 NC_003521.1 + 54708 0.67 0.907355
Target:  5'- --aAUCGGGCGCgCacauggAGAUCUUGGCCgAg -3'
miRNA:   3'- ugaUGGUCCGUG-G------UCUAGAACCGGgU- -5'
14437 3' -56.4 NC_003521.1 + 134394 0.67 0.907355
Target:  5'- cACgGCCAG-CGCCuuGUCgUGGCCCAu -3'
miRNA:   3'- -UGaUGGUCcGUGGucUAGaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 195523 0.67 0.901221
Target:  5'- --aGCuCGGGCuCCGGcUCcUGGCCCAg -3'
miRNA:   3'- ugaUG-GUCCGuGGUCuAGaACCGGGU- -5'
14437 3' -56.4 NC_003521.1 + 239378 0.67 0.894863
Target:  5'- uGCUGCCAccGGCgGCgCAGcUCgcGGCCCAg -3'
miRNA:   3'- -UGAUGGU--CCG-UG-GUCuAGaaCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.