miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 3' -54 NC_003521.1 + 137694 0.66 0.973643
Target:  5'- ---uGCuGCAGCACCGCCG-CG-CGCu -3'
miRNA:   3'- gaguCGuCGUCGUGGUGGUaGUaGUG- -5'
14468 3' -54 NC_003521.1 + 220936 0.66 0.973643
Target:  5'- -aCAGCAGCAGgaucagcgccgaCGCgGCCGUCAgcagggagCGCu -3'
miRNA:   3'- gaGUCGUCGUC------------GUGgUGGUAGUa-------GUG- -5'
14468 3' -54 NC_003521.1 + 172287 0.66 0.980807
Target:  5'- gUUGGCGGCcGCuGCCGCCGUCcgguGUCGg -3'
miRNA:   3'- gAGUCGUCGuCG-UGGUGGUAG----UAGUg -5'
14468 3' -54 NC_003521.1 + 57173 0.66 0.973375
Target:  5'- gUCGGCGugccGCAGCACgaagcggCGCagggaGUCAUCGCa -3'
miRNA:   3'- gAGUCGU----CGUCGUG-------GUGg----UAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 57406 0.66 0.973643
Target:  5'- -aCAGCGccguGCGGuCGcCCACCGUC-UCGCg -3'
miRNA:   3'- gaGUCGU----CGUC-GU-GGUGGUAGuAGUG- -5'
14468 3' -54 NC_003521.1 + 153127 0.66 0.973643
Target:  5'- -gCAGCAgGCGGCuuugguCCACCAgcgagggCGUCAg -3'
miRNA:   3'- gaGUCGU-CGUCGu-----GGUGGUa------GUAGUg -5'
14468 3' -54 NC_003521.1 + 83769 0.66 0.973643
Target:  5'- --gGGUGGCGGCGCCcCCcgCcgCGCu -3'
miRNA:   3'- gagUCGUCGUCGUGGuGGuaGuaGUG- -5'
14468 3' -54 NC_003521.1 + 26261 0.66 0.973643
Target:  5'- -cCAGCGcuGCuGCACCACCAgg--CACc -3'
miRNA:   3'- gaGUCGU--CGuCGUGGUGGUaguaGUG- -5'
14468 3' -54 NC_003521.1 + 28309 0.66 0.978603
Target:  5'- -gCAGCGGCAGCgACC-CCGg---CGCg -3'
miRNA:   3'- gaGUCGUCGUCG-UGGuGGUaguaGUG- -5'
14468 3' -54 NC_003521.1 + 150575 0.66 0.970872
Target:  5'- -gCGGCGGCGGCGCgGCUccuccUCcUCACu -3'
miRNA:   3'- gaGUCGUCGUCGUGgUGGu----AGuAGUG- -5'
14468 3' -54 NC_003521.1 + 136219 0.66 0.973643
Target:  5'- uCUCAGCGGCGucuacaGCUACC-UCAUgACg -3'
miRNA:   3'- -GAGUCGUCGUcg----UGGUGGuAGUAgUG- -5'
14468 3' -54 NC_003521.1 + 17539 0.66 0.970872
Target:  5'- uUCAGcCAGUuGCGCgaACgCAUCGUCACc -3'
miRNA:   3'- gAGUC-GUCGuCGUGg-UG-GUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 31879 0.66 0.973643
Target:  5'- --gAGCGGUAccGCACCGCCAggccgCggCACa -3'
miRNA:   3'- gagUCGUCGU--CGUGGUGGUa----GuaGUG- -5'
14468 3' -54 NC_003521.1 + 144983 0.66 0.973643
Target:  5'- cCUgAGcCAGCGGCauGCCACCGaggCcUCGCg -3'
miRNA:   3'- -GAgUC-GUCGUCG--UGGUGGUa--GuAGUG- -5'
14468 3' -54 NC_003521.1 + 12739 0.66 0.970872
Target:  5'- uUCuauCGGCAGUACCaACCAUUGUCGu -3'
miRNA:   3'- gAGuc-GUCGUCGUGG-UGGUAGUAGUg -5'
14468 3' -54 NC_003521.1 + 89322 0.66 0.970872
Target:  5'- -aCGGCGGUAGU-UCACCGUCcgcgauGUCGCa -3'
miRNA:   3'- gaGUCGUCGUCGuGGUGGUAG------UAGUG- -5'
14468 3' -54 NC_003521.1 + 238002 0.66 0.973643
Target:  5'- aUCGGuCGGCugGGuCGCCAgucuUCGUCAUCGCg -3'
miRNA:   3'- gAGUC-GUCG--UC-GUGGU----GGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 83259 0.66 0.975969
Target:  5'- cCUUGGCgugggggAGCA-CGCCugCGUUAUCGCa -3'
miRNA:   3'- -GAGUCG-------UCGUcGUGGugGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 31430 0.66 0.974696
Target:  5'- -gCAGCAggcggaugaugcGCAGCGCCagcacggcguuagaaGCCAgguaCAUCACg -3'
miRNA:   3'- gaGUCGU------------CGUCGUGG---------------UGGUa---GUAGUG- -5'
14468 3' -54 NC_003521.1 + 131402 0.66 0.976217
Target:  5'- gUCAGCcuGGaCcGCAUCGCCGUCAaCGCc -3'
miRNA:   3'- gAGUCG--UC-GuCGUGGUGGUAGUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.