miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 3' -54 NC_003521.1 + 1438 0.66 0.980807
Target:  5'- aCUgGGCcgcgAGCuGCGCCGCCGguggCAgCACa -3'
miRNA:   3'- -GAgUCG----UCGuCGUGGUGGUa---GUaGUG- -5'
14468 3' -54 NC_003521.1 + 2160 0.66 0.980807
Target:  5'- -cCAGCAGCAGCAaCugCAacaGUUGCa -3'
miRNA:   3'- gaGUCGUCGUCGUgGugGUag-UAGUG- -5'
14468 3' -54 NC_003521.1 + 5539 0.71 0.844685
Target:  5'- -aCGGCAGCcggcgcGGcCGCCGCCAUCGUUg- -3'
miRNA:   3'- gaGUCGUCG------UC-GUGGUGGUAGUAGug -5'
14468 3' -54 NC_003521.1 + 9199 0.69 0.908682
Target:  5'- aCUCcGUaAGCAGUACUACCGUCGcUACu -3'
miRNA:   3'- -GAGuCG-UCGUCGUGGUGGUAGUaGUG- -5'
14468 3' -54 NC_003521.1 + 9412 0.69 0.919829
Target:  5'- uUCAG-AGCacuaccacuacuaAGacCACCACCGUCAUCACu -3'
miRNA:   3'- gAGUCgUCG-------------UC--GUGGUGGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 10025 0.69 0.914656
Target:  5'- ---cGCAGCAGCGugACCAUUGUCAa -3'
miRNA:   3'- gaguCGUCGUCGUggUGGUAGUAGUg -5'
14468 3' -54 NC_003521.1 + 11183 0.69 0.90247
Target:  5'- -cCGGUgaGGCAGCACCugucuucagaGCCGUCGcgccUCACg -3'
miRNA:   3'- gaGUCG--UCGUCGUGG----------UGGUAGU----AGUG- -5'
14468 3' -54 NC_003521.1 + 11688 0.66 0.980807
Target:  5'- -aCAGaUAGCuGCACCACCGgcUCAUUc- -3'
miRNA:   3'- gaGUC-GUCGuCGUGGUGGU--AGUAGug -5'
14468 3' -54 NC_003521.1 + 12739 0.66 0.970872
Target:  5'- uUCuauCGGCAGUACCaACCAUUGUCGu -3'
miRNA:   3'- gAGuc-GUCGUCGUGG-UGGUAGUAGUg -5'
14468 3' -54 NC_003521.1 + 13461 0.72 0.8021
Target:  5'- -gCAGCGGCGGUAgCGCCGUCGaCGg -3'
miRNA:   3'- gaGUCGUCGUCGUgGUGGUAGUaGUg -5'
14468 3' -54 NC_003521.1 + 13853 0.75 0.639347
Target:  5'- gCUCGGCgcgggggucucugcgGGCGGCGCCGCCAUgGauuUCGCc -3'
miRNA:   3'- -GAGUCG---------------UCGUCGUGGUGGUAgU---AGUG- -5'
14468 3' -54 NC_003521.1 + 14463 0.67 0.967898
Target:  5'- gUCAGCcgccgcucccGCGGCGCUACCcgCGgggCGCg -3'
miRNA:   3'- gAGUCGu---------CGUCGUGGUGGuaGUa--GUG- -5'
14468 3' -54 NC_003521.1 + 15892 0.71 0.844685
Target:  5'- aUgGGCGGCAGCACgCGCCuguaCAUCuACg -3'
miRNA:   3'- gAgUCGUCGUCGUG-GUGGua--GUAG-UG- -5'
14468 3' -54 NC_003521.1 + 17016 0.69 0.896025
Target:  5'- --uGGCGGCGGCGCaggcCCGUCGUCugGCg -3'
miRNA:   3'- gagUCGUCGUCGUGgu--GGUAGUAG--UG- -5'
14468 3' -54 NC_003521.1 + 17489 0.8 0.35402
Target:  5'- -cCGGUAGCGGCGCCGCCG--GUCACg -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGUagUAGUG- -5'
14468 3' -54 NC_003521.1 + 17539 0.66 0.970872
Target:  5'- uUCAGcCAGUuGCGCgaACgCAUCGUCACc -3'
miRNA:   3'- gAGUC-GUCGuCGUGg-UG-GUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 19851 0.67 0.967589
Target:  5'- -cCGGCAGCGGCGgguacucgauuCUagauaagaaaacaAUCAUCAUCACg -3'
miRNA:   3'- gaGUCGUCGUCGU-----------GG-------------UGGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 21614 0.67 0.964715
Target:  5'- aCUCuGCuGCcuGGCgACCGCCAUCAUgGg -3'
miRNA:   3'- -GAGuCGuCG--UCG-UGGUGGUAGUAgUg -5'
14468 3' -54 NC_003521.1 + 25794 0.71 0.819655
Target:  5'- -gCGGCuGCAGC-CCACCAUCAg--- -3'
miRNA:   3'- gaGUCGuCGUCGuGGUGGUAGUagug -5'
14468 3' -54 NC_003521.1 + 25989 0.66 0.976217
Target:  5'- --gGGCAGCaaacAGCauggaACCGCCGUCGcCGCg -3'
miRNA:   3'- gagUCGUCG----UCG-----UGGUGGUAGUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.