miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 3' -54 NC_003521.1 + 117672 1.09 0.005789
Target:  5'- cCUCAGCAGCAGCACCACCAUCAUCACc -3'
miRNA:   3'- -GAGUCGUCGUCGUGGUGGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 90154 0.87 0.150694
Target:  5'- -gCAGCAGCGGCGCCGCCGccggagagccgccuUCGUCGCg -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGU--------------AGUAGUG- -5'
14468 3' -54 NC_003521.1 + 191705 0.85 0.186053
Target:  5'- -gCAGCAGCGGCGCCGCgGUCAcCACg -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGgUAGUaGUG- -5'
14468 3' -54 NC_003521.1 + 197666 0.85 0.200539
Target:  5'- -gCGGCAGCAGCGCCACCAgcgCGUgCACc -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGUa--GUA-GUG- -5'
14468 3' -54 NC_003521.1 + 132632 0.84 0.230769
Target:  5'- aCUCGGCGGCGGCGCCACCGgcgguucugcuuccUCGUCu- -3'
miRNA:   3'- -GAGUCGUCGUCGUGGUGGU--------------AGUAGug -5'
14468 3' -54 NC_003521.1 + 75653 0.81 0.309044
Target:  5'- -aCAGCGGC-GCAgucCCACCAUCAUCACc -3'
miRNA:   3'- gaGUCGUCGuCGU---GGUGGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 36080 0.81 0.338529
Target:  5'- -gCGGCGGCGGCGCCuCCAUCAcCACc -3'
miRNA:   3'- gaGUCGUCGUCGUGGuGGUAGUaGUG- -5'
14468 3' -54 NC_003521.1 + 17489 0.8 0.35402
Target:  5'- -cCGGUAGCGGCGCCGCCG--GUCACg -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGUagUAGUG- -5'
14468 3' -54 NC_003521.1 + 142430 0.8 0.361952
Target:  5'- -aCAGCAGCAGCGCCGCCGaagccUCGggCGCc -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGU-----AGUa-GUG- -5'
14468 3' -54 NC_003521.1 + 110695 0.8 0.378181
Target:  5'- -gCAGCGGCGGCGCCGCCGaCGaCGCa -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGUaGUaGUG- -5'
14468 3' -54 NC_003521.1 + 152235 0.79 0.420836
Target:  5'- aUCAcGC-GCGGCACCAUgAUCAUCACg -3'
miRNA:   3'- gAGU-CGuCGUCGUGGUGgUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 180144 0.78 0.438693
Target:  5'- -cCAGgAGCAGCGCCACC-UCGUCGu -3'
miRNA:   3'- gaGUCgUCGUCGUGGUGGuAGUAGUg -5'
14468 3' -54 NC_003521.1 + 160511 0.78 0.438693
Target:  5'- gUCGcGCAGCuccAGCACCACCGUCAccagCACg -3'
miRNA:   3'- gAGU-CGUCG---UCGUGGUGGUAGUa---GUG- -5'
14468 3' -54 NC_003521.1 + 111515 0.78 0.456975
Target:  5'- -gCGGCGGCGGCGCaCGCCAUCAaguucCACg -3'
miRNA:   3'- gaGUCGUCGUCGUG-GUGGUAGUa----GUG- -5'
14468 3' -54 NC_003521.1 + 181398 0.78 0.466268
Target:  5'- -cCGGCGGCGGCGCCGCUGUCGcgugcCACg -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGUAGUa----GUG- -5'
14468 3' -54 NC_003521.1 + 149977 0.78 0.475658
Target:  5'- gUCAGCAGCAGCACgggcggcgcgCACCcgCcgCACg -3'
miRNA:   3'- gAGUCGUCGUCGUG----------GUGGuaGuaGUG- -5'
14468 3' -54 NC_003521.1 + 52674 0.77 0.494714
Target:  5'- -gCAGCAGCGGCACCGgCAgCGUCGg -3'
miRNA:   3'- gaGUCGUCGUCGUGGUgGUaGUAGUg -5'
14468 3' -54 NC_003521.1 + 212402 0.77 0.504372
Target:  5'- -aCAGCAGCGGUACCGCCAggcUCAgCAg -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGU---AGUaGUg -5'
14468 3' -54 NC_003521.1 + 139801 0.77 0.51411
Target:  5'- cCUCGGCGGUGGCgaaGCCGCCGUCGagcCACu -3'
miRNA:   3'- -GAGUCGUCGUCG---UGGUGGUAGUa--GUG- -5'
14468 3' -54 NC_003521.1 + 118290 0.77 0.533809
Target:  5'- -gUAGCAGCAGCACUACCAcCGcCGCc -3'
miRNA:   3'- gaGUCGUCGUCGUGGUGGUaGUaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.