Results 1 - 20 of 307 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14468 | 3' | -54 | NC_003521.1 | + | 68541 | 0.73 | 0.726416 |
Target: 5'- -aCGGCGGCAGCgGCCGCCAacUAUCAg -3' miRNA: 3'- gaGUCGUCGUCG-UGGUGGUa-GUAGUg -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 142654 | 0.75 | 0.604503 |
Target: 5'- cCUCAGCGGuCGGCGCagCGCCGUCAgcaGCg -3' miRNA: 3'- -GAGUCGUC-GUCGUG--GUGGUAGUag-UG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 163784 | 0.74 | 0.665963 |
Target: 5'- -aCGGUAGCGGCGCCACCAccgccggccUCAacCGCa -3' miRNA: 3'- gaGUCGUCGUCGUGGUGGU---------AGUa-GUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 164319 | 0.74 | 0.695424 |
Target: 5'- -aCAGCAGCAGCagucacaGCCGCCAcgCGUCcCg -3' miRNA: 3'- gaGUCGUCGUCG-------UGGUGGUa-GUAGuG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 114956 | 0.74 | 0.696433 |
Target: 5'- -gCAGCGGCGGCugCugCggCGUCAg -3' miRNA: 3'- gaGUCGUCGUCGugGugGuaGUAGUg -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 133062 | 0.74 | 0.696433 |
Target: 5'- -cCAGCAGCAGCAgUCACagcCAUCGCa -3' miRNA: 3'- gaGUCGUCGUCGU-GGUGguaGUAGUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 153406 | 0.73 | 0.706494 |
Target: 5'- cCUCGuGCAGguGCGCCACCggcGUgGUCAg -3' miRNA: 3'- -GAGU-CGUCguCGUGGUGG---UAgUAGUg -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 73150 | 0.73 | 0.716491 |
Target: 5'- -gCGGCGGCGGCGCCGCC-UCGgccUGCg -3' miRNA: 3'- gaGUCGUCGUCGUGGUGGuAGUa--GUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 226150 | 0.73 | 0.726416 |
Target: 5'- -cCAGCGGCGGCACuCGgCGUCGUUcaGCg -3' miRNA: 3'- gaGUCGUCGUCGUG-GUgGUAGUAG--UG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 191887 | 0.76 | 0.584099 |
Target: 5'- aCUgGGCGGCGGCGCCAC-GUCcuUCACg -3' miRNA: 3'- -GAgUCGUCGUCGUGGUGgUAGu-AGUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 118290 | 0.77 | 0.533809 |
Target: 5'- -gUAGCAGCAGCACUACCAcCGcCGCc -3' miRNA: 3'- gaGUCGUCGUCGUGGUGGUaGUaGUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 139801 | 0.77 | 0.51411 |
Target: 5'- cCUCGGCGGUGGCgaaGCCGCCGUCGagcCACu -3' miRNA: 3'- -GAGUCGUCGUCG---UGGUGGUAGUa--GUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 132632 | 0.84 | 0.230769 |
Target: 5'- aCUCGGCGGCGGCGCCACCGgcgguucugcuuccUCGUCu- -3' miRNA: 3'- -GAGUCGUCGUCGUGGUGGU--------------AGUAGug -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 75653 | 0.81 | 0.309044 |
Target: 5'- -aCAGCGGC-GCAgucCCACCAUCAUCACc -3' miRNA: 3'- gaGUCGUCGuCGU---GGUGGUAGUAGUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 36080 | 0.81 | 0.338529 |
Target: 5'- -gCGGCGGCGGCGCCuCCAUCAcCACc -3' miRNA: 3'- gaGUCGUCGUCGUGGuGGUAGUaGUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 17489 | 0.8 | 0.35402 |
Target: 5'- -cCGGUAGCGGCGCCGCCG--GUCACg -3' miRNA: 3'- gaGUCGUCGUCGUGGUGGUagUAGUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 152235 | 0.79 | 0.420836 |
Target: 5'- aUCAcGC-GCGGCACCAUgAUCAUCACg -3' miRNA: 3'- gAGU-CGuCGUCGUGGUGgUAGUAGUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 180144 | 0.78 | 0.438693 |
Target: 5'- -cCAGgAGCAGCGCCACC-UCGUCGu -3' miRNA: 3'- gaGUCgUCGUCGUGGUGGuAGUAGUg -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 149977 | 0.78 | 0.475658 |
Target: 5'- gUCAGCAGCAGCACgggcggcgcgCACCcgCcgCACg -3' miRNA: 3'- gAGUCGUCGUCGUG----------GUGGuaGuaGUG- -5' |
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14468 | 3' | -54 | NC_003521.1 | + | 212402 | 0.77 | 0.504372 |
Target: 5'- -aCAGCAGCGGUACCGCCAggcUCAgCAg -3' miRNA: 3'- gaGUCGUCGUCGUGGUGGU---AGUaGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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