Results 1 - 20 of 87 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 240079 | 0.66 | 0.990438 |
Target: 5'- cCGGCGUGGggcuugcacgUGGugGGguUGUGCaCGUUGGg -3' miRNA: 3'- -GCUGUACU----------ACCugCU--ACGCG-GCAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 218718 | 0.66 | 0.989171 |
Target: 5'- gCGGCGgcGgcGGGCGAgaaGCGgCGUCGGg -3' miRNA: 3'- -GCUGUa-CuaCCUGCUa--CGCgGCAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 195142 | 0.66 | 0.990438 |
Target: 5'- aCGACAUGAgggccUGGAuCGAgauuuuacuuaGCGUCGUCa- -3' miRNA: 3'- -GCUGUACU-----ACCU-GCUa----------CGCGGCAGcu -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 224434 | 0.66 | 0.990438 |
Target: 5'- -uGCGUGGUGGGCGAgcgguccaggUGCGUC-UUGAc -3' miRNA: 3'- gcUGUACUACCUGCU----------ACGCGGcAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 202456 | 0.66 | 0.98763 |
Target: 5'- aGGCccugcuaGUGcUGGACGAgcuggGUGCCGUCu- -3' miRNA: 3'- gCUG-------UACuACCUGCUa----CGCGGCAGcu -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 134177 | 0.66 | 0.991585 |
Target: 5'- uGGcCAUGAUGacGGCGAUGaugagGUCGUCGGa -3' miRNA: 3'- gCU-GUACUAC--CUGCUACg----CGGCAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 107241 | 0.66 | 0.992522 |
Target: 5'- cCGuAgAUGGUGGACGGgguuugauugUGCGCCaccugguguguguGUCGGa -3' miRNA: 3'- -GC-UgUACUACCUGCU----------ACGCGG-------------CAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 65702 | 0.66 | 0.992621 |
Target: 5'- aGGCAaGAaGGACaGcgGCGCCG-CGGc -3' miRNA: 3'- gCUGUaCUaCCUG-CuaCGCGGCaGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 171396 | 0.66 | 0.990438 |
Target: 5'- gCGACuccaccGUGGugGugcGCGCCGUCa- -3' miRNA: 3'- -GCUGuac---UACCugCua-CGCGGCAGcu -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 104920 | 0.66 | 0.987777 |
Target: 5'- cCGACGacGAUGacGACGAgcgcGaCGCCGUCGGu -3' miRNA: 3'- -GCUGUa-CUAC--CUGCUa---C-GCGGCAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 215028 | 0.66 | 0.987777 |
Target: 5'- uGGCAgcUGAUGGugGGcUGCaGCCG-CGu -3' miRNA: 3'- gCUGU--ACUACCugCU-ACG-CGGCaGCu -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 157269 | 0.66 | 0.990438 |
Target: 5'- uCGACGucaaccUGGUGGGCcccGUGUGCC-UCGAu -3' miRNA: 3'- -GCUGU------ACUACCUGc--UACGCGGcAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 39852 | 0.66 | 0.990438 |
Target: 5'- cCGGCGUGGggcuugcacgUGGugGGguUGUGCaCGUUGGg -3' miRNA: 3'- -GCUGUACU----------ACCugCU--ACGCG-GCAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 204742 | 0.66 | 0.987777 |
Target: 5'- gGugGUGAUGGAg---GCGCCGcCGc -3' miRNA: 3'- gCugUACUACCUgcuaCGCGGCaGCu -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 18889 | 0.66 | 0.990438 |
Target: 5'- gCGACGa---GGACGAgGCGCCG-CGGc -3' miRNA: 3'- -GCUGUacuaCCUGCUaCGCGGCaGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 164435 | 0.66 | 0.991585 |
Target: 5'- uCGGCAaGGUGGAgG--GCGCCG-CGGg -3' miRNA: 3'- -GCUGUaCUACCUgCuaCGCGGCaGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 190579 | 0.66 | 0.991585 |
Target: 5'- aCGGCGUGAUcgaGGGCGAggagugGCcCCG-CGAc -3' miRNA: 3'- -GCUGUACUA---CCUGCUa-----CGcGGCaGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 15782 | 0.66 | 0.991585 |
Target: 5'- gCGACcaguUGuUGGACGAcgugaucugcUGCGCCGagCGGc -3' miRNA: 3'- -GCUGu---ACuACCUGCU----------ACGCGGCa-GCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 29987 | 0.66 | 0.991585 |
Target: 5'- gGACGgaggGAggGGACGA-GCGCCacggaccgcuGUCGGa -3' miRNA: 3'- gCUGUa---CUa-CCUGCUaCGCGG----------CAGCU- -5' |
|||||||
14468 | 5' | -53.7 | NC_003521.1 | + | 164514 | 0.66 | 0.992621 |
Target: 5'- gGGCGUGAcGcGCGAcGUGCUGUCGu -3' miRNA: 3'- gCUGUACUaCcUGCUaCGCGGCAGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home