miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 5' -53.7 NC_003521.1 + 119319 0.68 0.97382
Target:  5'- aGGCG-GAUGG-UGAUGCGCacgcgGUCGGg -3'
miRNA:   3'- gCUGUaCUACCuGCUACGCGg----CAGCU- -5'
14468 5' -53.7 NC_003521.1 + 111199 0.69 0.954754
Target:  5'- gGACgGUGGgcUGGGCGAUgGCGCCGgaaagugggCGAc -3'
miRNA:   3'- gCUG-UACU--ACCUGCUA-CGCGGCa--------GCU- -5'
14468 5' -53.7 NC_003521.1 + 103881 0.69 0.954754
Target:  5'- cCGACAggggGAUGGGCuGccGCGCgGUCa- -3'
miRNA:   3'- -GCUGUa---CUACCUG-CuaCGCGgCAGcu -5'
14468 5' -53.7 NC_003521.1 + 30997 0.69 0.958446
Target:  5'- uCGGgAUGggGcGACGAcgGCGCCGgCGAg -3'
miRNA:   3'- -GCUgUACuaC-CUGCUa-CGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 36260 0.69 0.958446
Target:  5'- gCGACGUGGUGGAuucguggauCGAgGCGCUGcgcaccUCGGa -3'
miRNA:   3'- -GCUGUACUACCU---------GCUaCGCGGC------AGCU- -5'
14468 5' -53.7 NC_003521.1 + 232577 0.68 0.965198
Target:  5'- uGugGUGAgcgggGGGCGAcaUGCGUaCGUCGu -3'
miRNA:   3'- gCugUACUa----CCUGCU--ACGCG-GCAGCu -5'
14468 5' -53.7 NC_003521.1 + 98018 0.68 0.968267
Target:  5'- gGAgGUGGU-GACGAUGuCGUCGUCa- -3'
miRNA:   3'- gCUgUACUAcCUGCUAC-GCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 168604 0.68 0.971139
Target:  5'- gGACAUGGgcugcUGGGCG-UGCGCCaUCu- -3'
miRNA:   3'- gCUGUACU-----ACCUGCuACGCGGcAGcu -5'
14468 5' -53.7 NC_003521.1 + 219721 0.68 0.971139
Target:  5'- uGACGUGcgcGGAgGGaccGCGCCGUCGc -3'
miRNA:   3'- gCUGUACua-CCUgCUa--CGCGGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 133427 0.69 0.942371
Target:  5'- -uACAUGuuuUGGAUGggGCGCCGUUc- -3'
miRNA:   3'- gcUGUACu--ACCUGCuaCGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 132578 0.7 0.937798
Target:  5'- uCGACAccagaagaUGAUGGAaGcgGCGgCGUCGGc -3'
miRNA:   3'- -GCUGU--------ACUACCUgCuaCGCgGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 19797 0.7 0.937798
Target:  5'- -cACAaGAUGG-CGA-GCGCCGUCGc -3'
miRNA:   3'- gcUGUaCUACCuGCUaCGCGGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 142067 0.78 0.568183
Target:  5'- aGACAcGGUGGACGAcgucaacUGCGCCuucGUCGAu -3'
miRNA:   3'- gCUGUaCUACCUGCU-------ACGCGG---CAGCU- -5'
14468 5' -53.7 NC_003521.1 + 224027 0.72 0.834623
Target:  5'- cCGGCGgucgGGGCGG-GCGCCGUCGc -3'
miRNA:   3'- -GCUGUacuaCCUGCUaCGCGGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 63867 0.72 0.850408
Target:  5'- uGACAcGGUGGACGAggcggcGCGCCGg-GAg -3'
miRNA:   3'- gCUGUaCUACCUGCUa-----CGCGGCagCU- -5'
14468 5' -53.7 NC_003521.1 + 201652 0.72 0.850408
Target:  5'- aCGACGUGAacgaacUGGgccGCGAgcUGCGCCGcCGGu -3'
miRNA:   3'- -GCUGUACU------ACC---UGCU--ACGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 118357 0.71 0.886481
Target:  5'- gGACAUGGUGGACu-UGaaCCGUCGGc -3'
miRNA:   3'- gCUGUACUACCUGcuACgcGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 143051 0.71 0.886481
Target:  5'- gCGACcugGAUGGugGuggugGCGCCGguggCGAu -3'
miRNA:   3'- -GCUGua-CUACCugCua---CGCGGCa---GCU- -5'
14468 5' -53.7 NC_003521.1 + 166788 0.71 0.899448
Target:  5'- aGGCggGGUcGGACGAUGCcGCCGcCGc -3'
miRNA:   3'- gCUGuaCUA-CCUGCUACG-CGGCaGCu -5'
14468 5' -53.7 NC_003521.1 + 52502 0.71 0.905602
Target:  5'- aCGACAaGGUGGGCGGUagagaGCGCgG-CGAa -3'
miRNA:   3'- -GCUGUaCUACCUGCUA-----CGCGgCaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.