miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 5' -53.7 NC_003521.1 + 117706 1.09 0.008799
Target:  5'- gCGACAUGAUGGACGAUGCGCCGUCGAc -3'
miRNA:   3'- -GCUGUACUACCUGCUACGCGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 142067 0.78 0.568183
Target:  5'- aGACAcGGUGGACGAcgucaacUGCGCCuucGUCGAu -3'
miRNA:   3'- gCUGUaCUACCUGCU-------ACGCGG---CAGCU- -5'
14468 5' -53.7 NC_003521.1 + 172464 0.76 0.65865
Target:  5'- aGGCAggGccGGcaGCGGUGCGCCGUCGGc -3'
miRNA:   3'- gCUGUa-CuaCC--UGCUACGCGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 122727 0.75 0.707988
Target:  5'- uCGugGUcGUGGGCGAcgGCGCCGcCGAu -3'
miRNA:   3'- -GCugUAcUACCUGCUa-CGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 78195 0.75 0.736924
Target:  5'- aCGGCGUGcggagcGGGCGcgGCGCuCGUCGGa -3'
miRNA:   3'- -GCUGUACua----CCUGCuaCGCG-GCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 73255 0.74 0.755796
Target:  5'- gCGGCGUGAc-GACGA-GCGCCGUCa- -3'
miRNA:   3'- -GCUGUACUacCUGCUaCGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 22166 0.74 0.76508
Target:  5'- aGACGgugGAgagGGACGAgGCGCCGcCGGc -3'
miRNA:   3'- gCUGUa--CUa--CCUGCUaCGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 181716 0.72 0.834623
Target:  5'- uCGACAUGAUGGACGc-GCGCaCGcUGGc -3'
miRNA:   3'- -GCUGUACUACCUGCuaCGCG-GCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 224027 0.72 0.834623
Target:  5'- cCGGCGgucgGGGCGG-GCGCCGUCGc -3'
miRNA:   3'- -GCUGUacuaCCUGCUaCGCGGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 151497 0.72 0.842607
Target:  5'- gCGACAUcgcGGACGGUGaacuacCGCCGUCGGc -3'
miRNA:   3'- -GCUGUAcuaCCUGCUAC------GCGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 63867 0.72 0.850408
Target:  5'- uGACAcGGUGGACGAggcggcGCGCCGg-GAg -3'
miRNA:   3'- gCUGUaCUACCUGCUa-----CGCGGCagCU- -5'
14468 5' -53.7 NC_003521.1 + 1425 0.72 0.850408
Target:  5'- aCGACGUGAacgaacUGGgccGCGAgcUGCGCCGcCGGu -3'
miRNA:   3'- -GCUGUACU------ACC---UGCU--ACGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 165168 0.72 0.850408
Target:  5'- gGugAUGAUGGugGGacUGCGCCG-Cu- -3'
miRNA:   3'- gCugUACUACCugCU--ACGCGGCaGcu -5'
14468 5' -53.7 NC_003521.1 + 201652 0.72 0.850408
Target:  5'- aCGACGUGAacgaacUGGgccGCGAgcUGCGCCGcCGGu -3'
miRNA:   3'- -GCUGUACU------ACC---UGCU--ACGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 28487 0.72 0.858022
Target:  5'- gGugGUGAUGGGCG-UGa-CCGUCGGg -3'
miRNA:   3'- gCugUACUACCUGCuACgcGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 123433 0.71 0.879676
Target:  5'- aCGGCggGAUaGGACGGagGCGCCGUagCGGg -3'
miRNA:   3'- -GCUGuaCUA-CCUGCUa-CGCGGCA--GCU- -5'
14468 5' -53.7 NC_003521.1 + 143051 0.71 0.886481
Target:  5'- gCGACcugGAUGGugGuggugGCGCCGguggCGAu -3'
miRNA:   3'- -GCUGua-CUACCugCua---CGCGGCa---GCU- -5'
14468 5' -53.7 NC_003521.1 + 118357 0.71 0.886481
Target:  5'- gGACAUGGUGGACu-UGaaCCGUCGGc -3'
miRNA:   3'- gCUGUACUACCUGcuACgcGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 177788 0.71 0.893073
Target:  5'- cCGACGgggccuguccgcUGGUGGGCGucguggGCGCCGcCGGc -3'
miRNA:   3'- -GCUGU------------ACUACCUGCua----CGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 166788 0.71 0.899448
Target:  5'- aGGCggGGUcGGACGAUGCcGCCGcCGc -3'
miRNA:   3'- gCUGuaCUA-CCUGCUACG-CGGCaGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.