miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 5' -53.7 NC_003521.1 + 1425 0.72 0.850408
Target:  5'- aCGACGUGAacgaacUGGgccGCGAgcUGCGCCGcCGGu -3'
miRNA:   3'- -GCUGUACU------ACC---UGCU--ACGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 2228 0.66 0.98763
Target:  5'- aGGCccugcuaGUGcUGGACGAgcuggGUGCCGUCu- -3'
miRNA:   3'- gCUG-------UACuACCUGCUa----CGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 13450 0.67 0.982754
Target:  5'- gGACGUcaagcgcaGcGGCGGUaGCGCCGUCGAc -3'
miRNA:   3'- gCUGUAcua-----C-CUGCUA-CGCGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 15782 0.66 0.991585
Target:  5'- gCGACcaguUGuUGGACGAcgugaucugcUGCGCCGagCGGc -3'
miRNA:   3'- -GCUGu---ACuACCUGCU----------ACGCGGCa-GCU- -5'
14468 5' -53.7 NC_003521.1 + 18889 0.66 0.990438
Target:  5'- gCGACGa---GGACGAgGCGCCG-CGGc -3'
miRNA:   3'- -GCUGUacuaCCUGCUaCGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 19797 0.7 0.937798
Target:  5'- -cACAaGAUGG-CGA-GCGCCGUCGc -3'
miRNA:   3'- gcUGUaCUACCuGCUaCGCGGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 22166 0.74 0.76508
Target:  5'- aGACGgugGAgagGGACGAgGCGCCGcCGGc -3'
miRNA:   3'- gCUGUa--CUa--CCUGCUaCGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 28487 0.72 0.858022
Target:  5'- gGugGUGAUGGGCG-UGa-CCGUCGGg -3'
miRNA:   3'- gCugUACUACCUGCuACgcGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 29987 0.66 0.991585
Target:  5'- gGACGgaggGAggGGACGA-GCGCCacggaccgcuGUCGGa -3'
miRNA:   3'- gCUGUa---CUa-CCUGCUaCGCGG----------CAGCU- -5'
14468 5' -53.7 NC_003521.1 + 30997 0.69 0.958446
Target:  5'- uCGGgAUGggGcGACGAcgGCGCCGgCGAg -3'
miRNA:   3'- -GCUgUACuaC-CUGCUa-CGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 35809 0.66 0.992013
Target:  5'- aCGGCGgcGUGGGCGAgaaccuggcggugcGCGCCGagGAu -3'
miRNA:   3'- -GCUGUacUACCUGCUa-------------CGCGGCagCU- -5'
14468 5' -53.7 NC_003521.1 + 36260 0.69 0.958446
Target:  5'- gCGACGUGGUGGAuucguggauCGAgGCGCUGcgcaccUCGGa -3'
miRNA:   3'- -GCUGUACUACCU---------GCUaCGCGGC------AGCU- -5'
14468 5' -53.7 NC_003521.1 + 36542 0.68 0.965198
Target:  5'- uCGGCAUGccGGucauguCGA-GCGCCGUCu- -3'
miRNA:   3'- -GCUGUACuaCCu-----GCUaCGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 39852 0.66 0.990438
Target:  5'- cCGGCGUGGggcuugcacgUGGugGGguUGUGCaCGUUGGg -3'
miRNA:   3'- -GCUGUACU----------ACCugCU--ACGCG-GCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 46181 0.66 0.992621
Target:  5'- aGugGUGAUGGgcugcACGGUGCuGgUGUCGu -3'
miRNA:   3'- gCugUACUACC-----UGCUACG-CgGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 48213 0.69 0.942371
Target:  5'- cCGACGUGGUGG-UGAccGUuCCGUCGAc -3'
miRNA:   3'- -GCUGUACUACCuGCUa-CGcGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 52502 0.71 0.905602
Target:  5'- aCGACAaGGUGGGCGGUagagaGCGCgG-CGAa -3'
miRNA:   3'- -GCUGUaCUACCUGCUA-----CGCGgCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 59860 0.67 0.978631
Target:  5'- gGGCcgGucaacGGCGAUGUGCCGcCGAg -3'
miRNA:   3'- gCUGuaCuac--CUGCUACGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 63867 0.72 0.850408
Target:  5'- uGACAcGGUGGACGAggcggcGCGCCGg-GAg -3'
miRNA:   3'- gCUGUaCUACCUGCUa-----CGCGGCagCU- -5'
14468 5' -53.7 NC_003521.1 + 65290 0.67 0.976315
Target:  5'- aCGACAUGcUGGGg---GCGCUGUCGc -3'
miRNA:   3'- -GCUGUACuACCUgcuaCGCGGCAGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.