miRNA display CGI


Results 21 - 40 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 20167 0.74 0.39188
Target:  5'- aGACGacGGCGAcgACG-GUCCGCGUCGCg -3'
miRNA:   3'- cCUGCa-CCGCU--UGCgCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 121881 0.74 0.368352
Target:  5'- cGGGCGcUGGCccugacgGGACGCcgccGCCCaCGCCGCg -3'
miRNA:   3'- -CCUGC-ACCG-------CUUGCG----CGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 197858 0.77 0.263431
Target:  5'- uGGGCGccGGCGGGuCGCGCUCGCuggGCUGCa -3'
miRNA:   3'- -CCUGCa-CCGCUU-GCGCGGGCG---CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 187607 0.78 0.228587
Target:  5'- cGGugGgcacggccugccgGGCGAGcCGgGCCgCGCGCCGCu -3'
miRNA:   3'- -CCugCa------------CCGCUU-GCgCGG-GCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 168024 0.73 0.448459
Target:  5'- uGGugGUGGUaGGCGUGCgggucuuggagCUGUGCCGCc -3'
miRNA:   3'- -CCugCACCGcUUGCGCG-----------GGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 169583 0.73 0.415561
Target:  5'- gGGAuCGUGGCGucUGUGCUgucaGUGCCGCg -3'
miRNA:   3'- -CCU-GCACCGCuuGCGCGGg---CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 22428 0.75 0.347235
Target:  5'- cGGCGUGGcCGAguAC-CGCCCGCGCuucaCGCg -3'
miRNA:   3'- cCUGCACC-GCU--UGcGCGGGCGCG----GCG- -5'
14479 5' -61.6 NC_003521.1 + 125428 0.78 0.210751
Target:  5'- aGGcCGUGGCGG-C-CGCCCGCGCCcuGCa -3'
miRNA:   3'- -CCuGCACCGCUuGcGCGGGCGCGG--CG- -5'
14479 5' -61.6 NC_003521.1 + 182374 0.73 0.414757
Target:  5'- cGACGUGGUGcGCGgaaaguuCGCCCggcaGCGCUGCg -3'
miRNA:   3'- cCUGCACCGCuUGC-------GCGGG----CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 165269 0.81 0.156043
Target:  5'- aGGGCGcUGGCGuagcCGcCGCCgGCGCCGCu -3'
miRNA:   3'- -CCUGC-ACCGCuu--GC-GCGGgCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 49715 0.75 0.354418
Target:  5'- uGGACacgauagaacugGUGGaCGAgACGCaGCCCGCcGCCGCc -3'
miRNA:   3'- -CCUG------------CACC-GCU-UGCG-CGGGCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 235270 0.74 0.396545
Target:  5'- cGGACGgaacaacgauggcGGCGGcCGCGCCgGCuGCCGUc -3'
miRNA:   3'- -CCUGCa------------CCGCUuGCGCGGgCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 196275 0.76 0.299903
Target:  5'- aGGGCGUccucauGUGAGCGCGUgCCGgGCCGCu -3'
miRNA:   3'- -CCUGCAc-----CGCUUGCGCG-GGCgCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 166217 0.77 0.268664
Target:  5'- uGGCGcGGCGGcgagGCGCGCcggccgcgggacgCCGCGCCGCc -3'
miRNA:   3'- cCUGCaCCGCU----UGCGCG-------------GGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 90838 0.77 0.252101
Target:  5'- cGGCG-GGUGcGCGcCGCCCGUGCUGCu -3'
miRNA:   3'- cCUGCaCCGCuUGC-GCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 116350 0.78 0.236387
Target:  5'- cGGACGgaccgcgagcgcggcGGCGAACGCGUgC-CGCCGCg -3'
miRNA:   3'- -CCUGCa--------------CCGCUUGCGCGgGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 77043 0.72 0.456907
Target:  5'- cGGugGUGGCGc-CGCuaCCGUuguuGCCGCc -3'
miRNA:   3'- -CCugCACCGCuuGCGcgGGCG----CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 15531 0.72 0.456907
Target:  5'- cGGcAUGUGGCGAACGCGCUgggaagaggggGCGCC-Ca -3'
miRNA:   3'- -CC-UGCACCGCUUGCGCGGg----------CGCGGcG- -5'
14479 5' -61.6 NC_003521.1 + 170877 0.73 0.423647
Target:  5'- cGGGCGcgGGUGGucAgGCGUCCGgCGUCGCg -3'
miRNA:   3'- -CCUGCa-CCGCU--UgCGCGGGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 111088 0.73 0.415561
Target:  5'- aGACG-GcGCGGACGCGCUcggcgucgaCGgGCCGCg -3'
miRNA:   3'- cCUGCaC-CGCUUGCGCGG---------GCgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.